Rh2BG257900

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001954
Physical Location & Seq
Reverse (-)
27126405 .. 27132186
5782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG257900.1

Sequence Viewer

Length: 282 bp
ATGGAAAATAAATATATTTTGAGAAATAGTTGGGTCGTGGAACATGTTGTTTGGAACGTGTCTCTGATGGAGAAGATGAGTTCAAGCACAACTAGTTCTGCAGCAGCATACCCGAAGCCACCTTATTCGGCTCCACCACCTGCTGGTTATCCAACAAGATCTGATGCCGGTGGCCAAAACGGTGCTCCTGTTCCGGTAGAGACCAAGTCGAAGGGTGATGGGTTCTGGAAGGGATGCTGTGCTGCTTTGTGTTGCTGTTGTATGTTGGATGCTTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

93

Amino Acids

9.95

Weight (kDa)

7.53

Isoelectric Point (pI)

61.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 49 - 93 2.2e-12 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 2 cut(s) 43, 57
AgsI TTSAA 1 cut(s) 84
AhlI ACTAGT 1 cut(s) 92
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 66, 194
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 3 cut(s) 101, 104, 242
AsuHPI GGTGA 1 cut(s) 227
BalI TGGCCA 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 3 cut(s) 113, 116, 229
BccI CCATC 2 cut(s) 61, 212
BcoDI GTCTC 2 cut(s) 66, 194
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 148
BglII AGATCT 1 cut(s) 158
BisI GCNGC 3 cut(s) 102, 105, 243
BlsI GCNGC 3 cut(s) 103, 106, 244
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 3 cut(s) 154, 224, 259
BsaI GGTCTC 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 167
BseGI GGATG 2 cut(s) 239, 274
BseLI CCNNNNNNNGG 1 cut(s) 143
BseXI GCAGC 3 cut(s) 113, 116, 229
BshFI GGCC 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 168, 194
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 66, 194
BsnI GGCC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 158
BspANI GGCC 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssMI GATC 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 182
BstF5I GGATG 2 cut(s) 239, 274
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 2 cut(s) 66, 194
BstMBI GATC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 113, 116, 229
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 239, 274
BveI ACCTGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 167
CviAII CATG 1 cut(s) 44
CviJI RGCY 3 cut(s) 118, 131, 174
CviKI_1 RGCY 3 cut(s) 118, 131, 174
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 194
FaeI CATG 1 cut(s) 47
FaiI YATR 4 cut(s) 15, 45, 109, 263
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 102, 105, 243
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 102, 105, 243
FspBI CTAG 1 cut(s) 93
GluI GCNGC 3 cut(s) 102, 105, 243
HaeIII GGCC 1 cut(s) 174
HapII CCGG 2 cut(s) 168, 194
Hin1II CATG 1 cut(s) 47
HpaII CCGG 2 cut(s) 168, 194
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 66, 163
Hpy188III TCNNGA 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 205, 223
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 136, 190
LpnPI CCDG 6 cut(s) 129, 153, 181, 201, 207, 211
Lsp1109I GCAGC 3 cut(s) 113, 116, 229
LweI GCATC 3 cut(s) 154, 224, 259
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 174
MluNI TGGCCA 1 cut(s) 174
MmeI TCCRAC 2 cut(s) 176, 246
Mox20I TGGCCA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 174
MspI CCGG 2 cut(s) 168, 194
NdeII GATC 1 cut(s) 158
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 132
NspI RCATGY 1 cut(s) 47
PaqCI CACCTGC 1 cut(s) 148
PciI ACATGT 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 3 cut(s) 103, 106, 244
PscI ACATGT 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 132
PstI CTGCAG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 205
SatI GCNGC 3 cut(s) 102, 105, 243
Sau3AI GATC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 187
SetI ASST 3 cut(s) 60, 124, 142
SfaNI GCATC 3 cut(s) 154, 224, 259
SfcI CTRYAG 1 cut(s) 99
SpeI ACTAGT 1 cut(s) 92
SspMI CTAG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 209
TseI GCWGC 3 cut(s) 101, 104, 242
Tth111I GACNNNGTC 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 143
XceI RCATGY 1 cut(s) 47
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.