Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001954

Physical Location & Seq

Genomic Coordinates Forward (+)

19416037 .. 19416540

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G185400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGCGCCCGGATCTTATTACGTGCAGGCTCCGCCACCTGCTGGTTATCCCACAAGAGATGCTCTAAATCCTGCTTCCGCTCATCATGGGCCTGTAGAAACCAAGTCCAAGGGTGATGGCTTCTGGAAGGGATGTTGTGCTGCCTTGTGTTGTTGTTGTCTCTTGGATGCTTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

60

Amino Acids

6.15

Weight (kDa)

6.67

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05340 AT2G32190 AT2G32190 AT2G32200 AT2G32200 AT2G32210 AT2G32210 AT2G32210 AT3G22231 AT3G22235 AT3G22235 AT3G22240
fragaria_vesca	FvH4_1g21001 FvH4_6g39683
malus_domestica	MD01G1028400.v1.1 MD09G1137600.v1.1 MD17G1127900.v1.1
prunus_persica	Prupe.3G187200_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.6G185000_v2.0.a1 Prupe.6G185100_v2.0.a1 Prupe.6G185200_v2.0.a1 Prupe.6G185300_v2.0.a1 Prupe.6G185400_v2.0.a1 Prupe.6G185500_v2.0.a1 Prupe.6G185600_v2.0.a1
pyrus_communis	pycom09g05870 pycom17g12030
rosa_chinensis	RchiOBHm_Chr2g0114501 RchiOBHm_Chr2g0114521 RchiOBHm_Chr2g0153711 RchiOBHm_Chr2g0153751
rosa_laevigata	RLG00000020722
rosa_multiflora	Rmu_sc0015718.1_g000007
rosa_roxburghii	Rroxscaffold_2G00130230 Rroxscaffold_2G00130260
rosa_rugosa	Rorug02G0441600
rosa_samantha	Rh2AG248300 Rh2AG505100 Rh2BG257900 Rh2CG251600 Rh2DG256300
rosa_wichuraiana	Rw2G019300 Rw7G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	2 cut(s)	32, 78
AclWI	GGATC	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	6, 30
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	2 cut(s)	49, 157
BpuMI	CCSGG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	137, 172
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	2 cut(s)	32, 78
BspANI	GGCC	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	6, 30
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	11
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	137, 172
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	137, 172
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	3 cut(s)	29, 91, 120
CviKI_1	RGCY	3 cut(s)	29, 91, 120
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	89
FaiI	YATR	1 cut(s)	87
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	141
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	125
Hpy188III	TCNNGA	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	11, 22, 27, 51, 84, 105, 109
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	49, 157
MaeII	ACGT	1 cut(s)	21
MalI	GATC	1 cut(s)	13
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	1 cut(s)	11
MflI	RGATCY	1 cut(s)	11
Mly113I	GGCGCC	1 cut(s)	5
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	31
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	6, 30
PaqCI	CACCTGC	1 cut(s)	46
PflMI	CCANNNNNTGG	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	142
PluTI	GGCGCC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	6, 30
PspPI	GGNCC	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	11
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	2 cut(s)	24, 40
SfaNI	GCATC	2 cut(s)	49, 157
SfcI	CTRYAG	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	6
SsiI	CCGC	2 cut(s)	32, 78
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	24
TseI	GCWGC	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.