Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001954

Physical Location & Seq

Genomic Coordinates Forward (+)

19447480 .. 19448091

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G185600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAGCTCATCAGCTAATAACTCCGGCGCAGCATACCCTCCCCCACCTCATTCCACAGCTCCAAGTCCTTATTTTGTGCAGGCCCCACCACCTGCTGGTTATCCAACAAGAGATGGCCCAAATCCCCATGGACATGGAGCCGTAGAAACTAAGTCAAAAGGTGATGGCTTCTGGAAGGGATGCTGTGCTGCTTTGTGCTGCTGTTGCGTTTTGGATGCATGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

76

Amino Acids

7.65

Weight (kDa)

6.78

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05340 AT2G32190 AT2G32190 AT2G32200 AT2G32200 AT2G32210 AT2G32210 AT2G32210 AT3G22231 AT3G22235 AT3G22235 AT3G22240
fragaria_vesca	FvH4_1g21001 FvH4_6g39683
malus_domestica	MD01G1028400.v1.1 MD09G1137600.v1.1 MD17G1127900.v1.1
prunus_persica	Prupe.3G187200_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.6G185000_v2.0.a1 Prupe.6G185100_v2.0.a1 Prupe.6G185200_v2.0.a1 Prupe.6G185300_v2.0.a1 Prupe.6G185400_v2.0.a1 Prupe.6G185500_v2.0.a1 Prupe.6G185600_v2.0.a1
pyrus_communis	pycom09g05870 pycom17g12030
rosa_chinensis	RchiOBHm_Chr2g0114501 RchiOBHm_Chr2g0114521 RchiOBHm_Chr2g0153711 RchiOBHm_Chr2g0153751
rosa_laevigata	RLG00000020722
rosa_multiflora	Rmu_sc0015718.1_g000007
rosa_roxburghii	Rroxscaffold_2G00130230 Rroxscaffold_2G00130260
rosa_rugosa	Rorug02G0441600
rosa_samantha	Rh2AG248300 Rh2AG505100 Rh2BG257900 Rh2CG251600 Rh2DG256300
rosa_wichuraiana	Rw2G019300 Rw7G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	100
Acc36I	ACCTGC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	95
AluBI	AGCT	3 cut(s)	6, 14, 59
AluI	AGCT	3 cut(s)	6, 14, 59
Alw21I	GWGCWC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	81, 115
ApeKI	GCWGC	3 cut(s)	29, 188, 198
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	82, 116
AsuHPI	GGTGA	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	41, 175, 185
BccI	CCATC	2 cut(s)	107, 158
BceAI	ACGGC	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	3 cut(s)	30, 189, 199
BlsI	GCNGC	3 cut(s)	31, 190, 200
BmgT120I	GGNCC	2 cut(s)	82, 116
BmiI	GGNNCC	2 cut(s)	84, 139
BmsI	GCATC	2 cut(s)	170, 205
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	185, 220
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	41, 175, 185
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	83, 117
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	95
BsnI	GGCC	2 cut(s)	83, 117
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	2 cut(s)	83, 117
BspLI	GGNNCC	2 cut(s)	84, 139
BspMI	ACCTGC	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	185, 220
BstHHI	GCGC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	41, 175, 185
BstXI	CCANNNNNNTGG	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	83, 117
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	185, 220
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	81
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	82, 116
CviAII	CATG	3 cut(s)	128, 134, 219
CviJI	RGCY	7 cut(s)	6, 14, 59, 83, 117, 140, 168
CviKI_1	RGCY	7 cut(s)	6, 14, 59, 83, 117, 140, 168
DdeI	CTNAG	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	3 cut(s)	131, 137, 222
FaiI	YATR	4 cut(s)	34, 129, 135, 220
FatI	CATG	3 cut(s)	127, 133, 218
Fnu4HI	GCNGC	3 cut(s)	30, 189, 199
FokI	GGATG	1 cut(s)	192
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	30, 189, 199
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	30, 189, 199
HaeIII	GGCC	2 cut(s)	83, 117
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	131, 137, 222
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	79, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	131, 137, 222
HspAI	GCGC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	64, 137
LpnPI	CCDG	5 cut(s)	37, 65, 81, 105, 157
Lsp1109I	GCAGC	3 cut(s)	41, 175, 185
LweI	GCATC	2 cut(s)	170, 205
MhlI	GDGCHC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	2 cut(s)	48, 57
Mph1103I	ATGCAT	1 cut(s)	220
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	127
NlaIII	CATG	3 cut(s)	131, 137, 222
NlaIV	GGNNCC	2 cut(s)	84, 139
NsiI	ATGCAT	1 cut(s)	220
NspI	RCATGY	1 cut(s)	222
PaqCI	CACCTGC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	31, 190, 200
Psp124BI	GAGCTC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	84, 139
PspPI	GGNCC	2 cut(s)	82, 116
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	3 cut(s)	30, 189, 199
Sau96I	GGNCC	2 cut(s)	82, 116
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	8, 16, 49, 61, 94, 163
SfaNI	GCATC	2 cut(s)	170, 205
SgeI	CNNG	9 cut(s)	36, 75, 92, 104, 108, 120, 140, 146, 184
SmiMI	CAYNNNNRTG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	127
TseI	GCWGC	3 cut(s)	29, 188, 198
Van91I	CCANNNNNTGG	1 cut(s)	95
XceI	RCATGY	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.