MD01G1028400.v1.1

CYSTM1 family protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0001954
Physical Location & Seq
Forward (+)
10529331 .. 10529489
159 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1028400.v1.1.491

Sequence Viewer

Length: 159 bp
ATGTGCAGGCCACTACCAGCTGGTTATCCCACAAGAGACGATGACCAAGGTCGCCCATCTACTCATGGACGTGTAGAAACCAAGTCCAAAGGTGATGACTTCTGGAAGGGATGTGCTGCTGCCTTGTGTTGCTGCTGTCTCTTGGATGCTTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

53

Amino Acids

5.67

Weight (kDa)

6.5

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 8 - 52 8.5e-15 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 70
AjiI CACGTC 1 cut(s) 71
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 30, 143
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 3 cut(s) 116, 119, 132
AsuHPI GGTGA 1 cut(s) 104
BbvI GCAGC 3 cut(s) 103, 106, 119
BccI CCATC 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 30, 143
BisI GCNGC 3 cut(s) 117, 120, 133
BlsI GCNGC 3 cut(s) 118, 121, 134
BmgBI CACGTC 1 cut(s) 71
BmsI GCATC 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 116, 151
BseXI GCAGC 3 cut(s) 103, 106, 119
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 10
BsmAI GTCTC 2 cut(s) 30, 143
BsmBI CGTCTC 1 cut(s) 30
BsnI GGCC 1 cut(s) 10
BspANI GGCC 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 8
BstF5I GGATG 2 cut(s) 116, 151
BstMAI GTCTC 2 cut(s) 30, 143
BstPAI GACNNNNGTC 1 cut(s) 48
BstV1I GCAGC 3 cut(s) 103, 106, 119
BsuRI GGCC 1 cut(s) 10
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 116, 151
Cac8I GCNNGC 1 cut(s) 8
CviAII CATG 1 cut(s) 65
CviJI RGCY 2 cut(s) 10, 20
CviKI_1 RGCY 2 cut(s) 10, 20
Eco130I CCWWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 1 cut(s) 68
FaiI YATR 1 cut(s) 66
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 117, 120, 133
FokI GGATG 1 cut(s) 123
Fsp4HI GCNGC 3 cut(s) 117, 120, 133
GluI GCNGC 3 cut(s) 117, 120, 133
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 1 cut(s) 68
HphI GGTGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 1 cut(s) 68
LpnPI CCDG 3 cut(s) 6, 30, 88
Lsp1109I GCAGC 3 cut(s) 103, 106, 119
LweI GCATC 1 cut(s) 136
MaeII ACGT 1 cut(s) 70
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 20
NlaIII CATG 1 cut(s) 68
PkrI GCNGC 3 cut(s) 118, 121, 134
PshAI GACNNNNGTC 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 69
SatI GCNGC 3 cut(s) 117, 120, 133
SetI ASST 4 cut(s) 22, 52, 73, 94
SfaNI GCATC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 1 cut(s) 73
TseI GCWGC 3 cut(s) 116, 119, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.