AT2G32200

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001954
Physical Location & Seq
Forward (+)
13676389 .. 13677306
918 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32200.2

Sequence Viewer

Length: 228 bp
ATGAGCCAATACAGTCAAAACCAATATGCAGGAGCTTATCCTACGCCGCCAGTGTCTACCGGTCCATACGTGGCACCGCCACCGCTCGGTTACCCAACGAACGACACGACTCATGCTACGGTGGCTCCTGTCGAGACAAAGTCTAAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGTCTTGCGACCATGTTGGCCTGTTGCGTCCTCGACGCATGCATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

75

Amino Acids

7.8

Weight (kDa)

4.83

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 64 - 107 1.4e-09 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 56
AciI CCGC 3 cut(s) 47, 77, 83
AfiI CCNNNNNNNGG 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 2 cut(s) 35, 155
AluI AGCT 2 cut(s) 35, 155
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 155
AsiGI ACCGGT 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 128
BisI GCNGC 2 cut(s) 47, 156
BlsI GCNGC 2 cut(s) 48, 157
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 2 cut(s) 75, 126
BsaAI YACGTR 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 59
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 197
BspACI CCGC 3 cut(s) 47, 77, 83
BspANI GGCC 1 cut(s) 197
BspLI GGNNCC 2 cut(s) 75, 126
BspT107I GGYRCC 1 cut(s) 73
BsrBI CCGCTC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 14, 121
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 217
BstEII GGTNACC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 219
BstPI GGTNACC 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 62
CseI GACGC 2 cut(s) 193, 221
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 3 cut(s) 113, 190, 216
CviJI RGCY 6 cut(s) 6, 35, 125, 155, 177, 197
CviKI_1 RGCY 6 cut(s) 6, 35, 125, 155, 177, 197
Eco47I GGWCC 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 221
FaeI CATG 3 cut(s) 116, 193, 219
FaiI YATR 5 cut(s) 27, 67, 114, 191, 217
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FatI CATG 3 cut(s) 112, 189, 215
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 47, 156
Fsp4HI GCNGC 2 cut(s) 47, 156
GluI GCNGC 2 cut(s) 47, 156
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 60
HgaI GACGC 2 cut(s) 193, 221
Hin1II CATG 3 cut(s) 116, 193, 219
HinfI GANTC 2 cut(s) 109, 165
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 2 cut(s) 133, 169
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 215
HpyCH4III ACNGT 2 cut(s) 14, 121
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 2 cut(s) 29, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 3 cut(s) 116, 193, 219
LmnI GCTCC 2 cut(s) 32, 130
LpnPI CCDG 5 cut(s) 15, 63, 73, 141, 211
Lsp1109I GCAGC 1 cut(s) 142
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 89
MbiI CCGCTC 1 cut(s) 85
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 221
MspI CCGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 122
NlaIII CATG 3 cut(s) 116, 193, 219
NlaIV GGNNCC 2 cut(s) 75, 126
NsiI ATGCAT 1 cut(s) 221
NspI RCATGY 1 cut(s) 219
PaeI GCATGC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PfeI GAWTC 1 cut(s) 165
PflFI GACNNNGTC 1 cut(s) 139
PinAI ACCGGT 1 cut(s) 59
PkrI GCNGC 2 cut(s) 48, 157
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Ppu21I YACGTR 1 cut(s) 70
PspEI GGTNACC 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 75, 126
PspPI GGNCC 1 cut(s) 62
PsyI GACNNNGTC 1 cut(s) 139
SatI GCNGC 2 cut(s) 47, 156
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 103
SetI ASST 4 cut(s) 37, 72, 151, 157
SinI GGWCC 1 cut(s) 62
SphI GCATGC 1 cut(s) 219
SsiI CCGC 3 cut(s) 47, 77, 83
TaaI ACNGT 2 cut(s) 14, 121
TaiI ACGT 1 cut(s) 72
TaqI TCGA 2 cut(s) 132, 210
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 165
TscAI CASTG 1 cut(s) 57
TseI GCWGC 1 cut(s) 155
TspRI CASTG 1 cut(s) 57
Tth111I GACNNNGTC 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 62
XceI RCATGY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 56
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.