AT2G32210

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001954
Physical Location & Seq
Forward (+)
13677986 .. 13678906
921 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32210.1

Sequence Viewer

Length: 216 bp
ATGAGTCAATACAGCCAAAACCAATCTTCAGGAGCTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCGCCACCGCTAGGTTACCCAACGAACGACACAAGTCATGCCACGGTGGCAACGGTGGAGACAAAGTCCAAGGGTGATGGATTCTTAAAAGGCTGTCTTGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

71

Amino Acids

7.34

Weight (kDa)

5.41

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 30 - 71 3.8e-14 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 56
AciI CCGC 4 cut(s) 47, 77, 83, 176
AcoI YGGCCR 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 70, 86
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 128
AoxI GGCC 2 cut(s) 61, 177
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 161
BanI GGYRCC 1 cut(s) 73
BccI CCATC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 86
BglI GCCNNNNNGGC 1 cut(s) 122
BisI GCNGC 2 cut(s) 47, 177
BlsI GCNGC 2 cut(s) 48, 178
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 75
BoxI GACNNNNGTC 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 117, 144
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 86
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 117, 144
BseLI CCNNNNNNNGG 2 cut(s) 70, 86
BseNI ACTGG 1 cut(s) 50
BshFI GGCC 2 cut(s) 63, 179
BshNI GGYRCC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 70, 86
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 2 cut(s) 63, 179
BspACI CCGC 4 cut(s) 47, 77, 83, 176
BspANI GGCC 2 cut(s) 63, 179
BspLI GGNNCC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 117, 144
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 121, 130
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 117
BstEII GGTNACC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 210
BstPAI GACNNNNGTC 1 cut(s) 108
BstPI GGTNACC 1 cut(s) 89
BsuRI GGCC 2 cut(s) 63, 179
BtgI CCRYGG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 3 cut(s) 113, 181, 207
CviJI RGCY 5 cut(s) 15, 35, 63, 168, 179
CviKI_1 RGCY 5 cut(s) 15, 35, 63, 168, 179
EaeI YGGCCR 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 12
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 3 cut(s) 116, 184, 210
FaiI YATR 3 cut(s) 114, 182, 208
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 3 cut(s) 112, 180, 206
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 47, 177
Fsp4HI GCNGC 2 cut(s) 47, 177
FspBI CTAG 1 cut(s) 86
GluI GCNGC 2 cut(s) 47, 177
HaeIII GGCC 2 cut(s) 63, 179
HapII CCGG 1 cut(s) 60
Hin1II CATG 3 cut(s) 116, 184, 210
HinfI GANTC 2 cut(s) 4, 156
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 30
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 121, 130
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 3 cut(s) 116, 184, 210
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 3 cut(s) 15, 63, 73
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 89
MboII GAAGA 1 cut(s) 18
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 1 cut(s) 209
MseI TTAA 1 cut(s) 161
MspI CCGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 122
NlaIII CATG 3 cut(s) 116, 184, 210
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 1 cut(s) 210
PaeI GCATGC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 48, 178
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 70
PshAI GACNNNNGTC 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 62
PsyI GACNNNGTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 2 cut(s) 47, 177
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 13
SetI ASST 3 cut(s) 37, 72, 91
SphI GCATGC 1 cut(s) 210
SsiI CCGC 4 cut(s) 47, 77, 83, 176
SspMI CTAG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 121, 130
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 201
TauI GCSGC 2 cut(s) 49, 179
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 57
TspRI CASTG 1 cut(s) 57
Tth111I GACNNNGTC 1 cut(s) 139
XceI RCATGY 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 56
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.