pycom09g05870

CYSTM1 family protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001954
Physical Location & Seq
Forward (+)
4370804 .. 4372022
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05870.2

Sequence Viewer

Length: 216 bp
ATGAGTTCTACTAATTCAGCAGCAGGATACCCCGCTCCAGCTTCCGGCCCCGCTCAGGGTCCCTATTACGTGCAAGCTCCGCCACCAGCCGGCTACCCGACAAGAGATGAACCCCAAAACGCGGTTCCGGTAGAAACCAAGTCAAAGGGTGATGGCTTCTGGAAGGGCTGCTGTGCTGCCCTCTGTTGCTGTTGCATGCTGGATGCATGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

72

Amino Acids

7.31

Weight (kDa)

4.86

Isoelectric Point (pI)

60.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 35, 53
AccII CGCG 1 cut(s) 122
AciI CCGC 4 cut(s) 33, 51, 80, 122
AfiI CCNNNNNNNGG 5 cut(s) 44, 55, 56, 89, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 41, 77
AluI AGCT 2 cut(s) 41, 77
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 20, 168, 176
AspS9I GGNCC 2 cut(s) 47, 59
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 32, 155, 163
BccI CCATC 1 cut(s) 146
BciVI GTATCC 1 cut(s) 20
BfuI GTATCC 1 cut(s) 20
BisI GCNGC 3 cut(s) 21, 169, 177
BlsI GCNGC 3 cut(s) 22, 170, 178
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 47, 59
BmiI GGNNCC 4 cut(s) 49, 60, 61, 126
BmsI GCATC 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 55, 56, 89, 121
Bse118I RCCGGY 1 cut(s) 89
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 5 cut(s) 44, 55, 56, 89, 121
BseMII CTCAG 1 cut(s) 68
BseXI GCAGC 3 cut(s) 32, 155, 163
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 3 cut(s) 45, 90, 128
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 5 cut(s) 44, 55, 56, 89, 121
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 48
BspACI CCGC 4 cut(s) 33, 51, 80, 122
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 4 cut(s) 49, 60, 61, 126
BsrBI CCGCTC 2 cut(s) 35, 53
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 75, 91, 197
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNSI RCATGY 2 cut(s) 199, 210
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 32, 155, 163
BsuI GTATCC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 3 cut(s) 75, 91, 197
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 47, 59
CviAII CATG 2 cut(s) 196, 207
CviJI RGCY 7 cut(s) 41, 48, 77, 89, 93, 156, 168
CviKI_1 RGCY 7 cut(s) 41, 48, 77, 89, 93, 156, 168
DdeI CTNAG 1 cut(s) 54
EciI GGCGGA 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 208
FaeI CATG 2 cut(s) 199, 210
FaiI YATR 2 cut(s) 197, 208
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 195, 206
FauI CCCGC 2 cut(s) 40, 58
Fnu4HI GCNGC 3 cut(s) 21, 169, 177
Fsp4HI GCNGC 3 cut(s) 21, 169, 177
GluI GCNGC 3 cut(s) 21, 169, 177
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 1 cut(s) 48
HapII CCGG 3 cut(s) 45, 90, 128
Hin1II CATG 2 cut(s) 199, 210
HpaII CCGG 3 cut(s) 45, 90, 128
HphI GGTGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 73, 195, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 199, 210
KflI GGGWCCC 1 cut(s) 59
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
LmnI GCTCC 2 cut(s) 40, 82
LpnPI CCDG 9 cut(s) 9, 41, 51, 58, 99, 103, 141, 145, 185
Lsp1109I GCAGC 3 cut(s) 32, 155, 163
LweI GCATC 1 cut(s) 193
MaeII ACGT 1 cut(s) 69
MbiI CCGCTC 2 cut(s) 35, 53
MluCI AATT 1 cut(s) 13
MnlI CCTC 1 cut(s) 191
Mph1103I ATGCAT 1 cut(s) 208
MroNI GCCGGC 1 cut(s) 89
MspI CCGG 3 cut(s) 45, 90, 128
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 79
NaeI GCCGGC 1 cut(s) 91
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 2 cut(s) 199, 210
NlaIV GGNNCC 4 cut(s) 49, 60, 61, 126
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 2 cut(s) 199, 210
PaeI GCATGC 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 91
PkrI GCNGC 3 cut(s) 22, 170, 178
Ppu21I YACGTR 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 59
PspN4I GGNNCC 4 cut(s) 49, 60, 61, 126
PspPI GGNCC 2 cut(s) 47, 59
PspPPI RGGWCCY 1 cut(s) 59
SatI GCNGC 3 cut(s) 21, 169, 177
Sau96I GGNCC 2 cut(s) 47, 59
SetI ASST 3 cut(s) 43, 72, 79
SfaNI GCATC 1 cut(s) 193
SinI GGWCC 1 cut(s) 59
SphI GCATGC 1 cut(s) 199
Sse9I AATT 1 cut(s) 13
SsiI CCGC 4 cut(s) 33, 51, 80, 122
TaiI ACGT 1 cut(s) 72
TasI AATT 1 cut(s) 13
TseI GCWGC 3 cut(s) 20, 168, 176
TspDTI ATGAA 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 59
XceI RCATGY 2 cut(s) 199, 210
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.