RchiOBHm_Chr2g0153711

CYSTM1 family protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001954
Physical Location & Seq
Reverse (-)
71005435 .. 71006050
616 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52278

Sequence Viewer

Length: 219 bp
ATGAGTTCAAGTGCTAACTCCGCAGCAGCTTACCCCGCTCCGGCTTCCCAACAGGGACGTTACATCCAGGCGCCGCCTCCAGCCGGCTATCCCACCATGACAGACGATCAGTTGGCCCGAAGCCACGGTCCAGTCGAGACCAAGTCGAAGGGTGATGACTTTTGGAAGGGTTGCTGTGCTGCTCTTTGTTGCTGTTGTATGTTGGATGCTTGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

72

Amino Acids

7.55

Weight (kDa)

5.48

Isoelectric Point (pI)

60.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 29 - 72 5.7e-11 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccBSI CCGCTC 1 cut(s) 38
AciI CCGC 3 cut(s) 21, 36, 74
AcyI GRCGYC 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 40, 83
AgsI TTSAA 1 cut(s) 9
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 131
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 23, 26, 179
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 115, 128
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 35, 38, 166
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 74
BisI GCNGC 4 cut(s) 24, 27, 74, 180
BlsI GCNGC 4 cut(s) 25, 28, 75, 181
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 115, 128
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 83
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 2 cut(s) 63, 211
BseLI CCNNNNNNNGG 2 cut(s) 40, 83
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 3 cut(s) 35, 38, 166
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 70
BsiSI CCGG 2 cut(s) 41, 84
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 40, 83
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 3 cut(s) 21, 36, 74
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 85, 211
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 63, 211
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 20, 35
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 3 cut(s) 35, 38, 166
BsuRI GGCC 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 63, 211
Cac8I GCNNGC 2 cut(s) 85, 211
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 115, 128
CviAII CATG 1 cut(s) 97
CviJI RGCY 6 cut(s) 29, 44, 83, 87, 116, 123
CviKI_1 RGCY 6 cut(s) 29, 44, 83, 87, 116, 123
DinI GGCGCC 1 cut(s) 72
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 66
EgeI GGCGCC 1 cut(s) 72
EheI GGCGCC 1 cut(s) 72
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 98, 200
FaqI GGGAC 1 cut(s) 69
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 24, 27, 74, 180
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 4 cut(s) 24, 27, 74, 180
GlaI GCGC 1 cut(s) 72
GluI GCNGC 4 cut(s) 24, 27, 74, 180
GsuI CTGGAG 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 41, 84
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HpaII CCGG 2 cut(s) 41, 84
HphI GGTGA 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 142, 160
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 35
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 1 cut(s) 71
KasI GGCGCC 1 cut(s) 70
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 7 cut(s) 38, 53, 54, 80, 93, 97, 144
Lsp1109I GCAGC 3 cut(s) 35, 38, 166
LweI GCATC 1 cut(s) 196
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 108
MbiI CCGCTC 1 cut(s) 38
MboI GATC 1 cut(s) 106
Mly113I GGCGCC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 1 cut(s) 87
MroNI GCCGGC 1 cut(s) 83
MspI CCGG 2 cut(s) 41, 84
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 20, 35
NaeI GCCGGC 1 cut(s) 85
NarI GGCGCC 1 cut(s) 71
NdeII GATC 1 cut(s) 106
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 142
PkrI GCNGC 4 cut(s) 25, 28, 75, 181
PluTI GGCGCC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 2 cut(s) 115, 128
PsyI GACNNNGTC 1 cut(s) 142
SatI GCNGC 4 cut(s) 24, 27, 74, 180
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 2 cut(s) 115, 128
ScrFI CCNGG 1 cut(s) 68
SetI ASST 2 cut(s) 31, 61
SfaNI GCATC 1 cut(s) 196
SfoI GGCGCC 1 cut(s) 72
SinI GGWCC 1 cut(s) 128
SsiI CCGC 3 cut(s) 21, 36, 74
SspDI GGCGCC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 135, 146
TauI GCSGC 1 cut(s) 76
TseI GCWGC 3 cut(s) 23, 26, 179
Tth111I GACNNNGTC 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.