FvH4_1g21001

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001954
Physical Location & Seq
Reverse (-)
13079225 .. 13080068
844 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21001.t1

Sequence Viewer

Length: 315 bp
ATGTCATTCACTCACTCACCTCGATTCTTACTGACTGCCTCCGATCCGAGCTCGCCAAAATCCCTAGTGATGGTCGTCCTCGTCGTCTTCTCTCCAGTTAGTACTCAGATGAGTTCAAGCACAACTAGTTCTGTTGCTGCCTACCCTAAGCCGCCTTATTCGGCTCCACCACCTGCTGGTTATCCGGCAAGATCCAATGCCGGCGACCAAAACCCTGTTCCTGTTCCGGTAGAGACCAAGTCGAAGGGTGATGGATTCTGGAAAGGATGCTGTGCTGCTTTGTGTTGTTGTTGTATGTTGGATGCTTGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

105

Amino Acids

10.87

Weight (kDa)

8.19

Isoelectric Point (pI)

71.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 61 - 104 8.2e-12 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 181
AccB7I CCANNNNNTGG 1 cut(s) 176
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 38, 186
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 70, 176
AgsI TTSAA 1 cut(s) 117
AhlI ACTAGT 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 2 cut(s) 38, 186
ApeKI GCWGC 2 cut(s) 137, 275
AsuHPI GGTGA 2 cut(s) 9, 260
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 124, 262
BccI CCATC 2 cut(s) 64, 245
BcoDI GTCTC 1 cut(s) 227
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 2 cut(s) 65, 126
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 3 cut(s) 138, 152, 276
BlsI GCNGC 3 cut(s) 139, 153, 277
BmcAI AGTACT 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 2 cut(s) 257, 292
BpiI GAAGAC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 227
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 176
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 95
BseGI GGATG 2 cut(s) 272, 307
BseLI CCNNNNNNNGG 2 cut(s) 70, 176
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 124, 262
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 3 cut(s) 185, 201, 227
BslI CCNNNNNNNGG 2 cut(s) 70, 176
BsmAI GTCTC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 43, 191
BspACI CCGC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 2 cut(s) 38, 186
BspTNI GGTCTC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 200
BssMI GATC 2 cut(s) 43, 191
BstC8I GCNNGC 2 cut(s) 53, 202
BstDEI CTNAG 2 cut(s) 105, 147
BstF5I GGATG 2 cut(s) 272, 307
BstKTI GATC 2 cut(s) 46, 194
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 43, 191
BstV1I GCAGC 2 cut(s) 124, 262
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BtsCI GGATG 2 cut(s) 272, 307
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 53, 202
Cfr10I RCCGGY 1 cut(s) 200
Csp6I GTAC 1 cut(s) 102
CviJI RGCY 3 cut(s) 51, 151, 164
CviKI_1 RGCY 3 cut(s) 51, 151, 164
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 2 cut(s) 105, 147
DpnI GATC 2 cut(s) 45, 193
DpnII GATC 2 cut(s) 43, 191
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 53
FaiI YATR 1 cut(s) 296
Fnu4HI GCNGC 3 cut(s) 138, 152, 276
FokI GGATG 1 cut(s) 279
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 138, 152, 276
FspBI CTAG 2 cut(s) 65, 126
GluI GCNGC 3 cut(s) 138, 152, 276
GsuI CTGGAG 1 cut(s) 78
HapII CCGG 3 cut(s) 185, 201, 227
HinfI GANTC 2 cut(s) 24, 255
HpaII CCGG 3 cut(s) 185, 201, 227
HphI GGTGA 2 cut(s) 9, 260
Hpy188I TCNGA 4 cut(s) 43, 48, 108, 314
Hpy188III TCNNGA 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 238
HpyF3I CTNAG 2 cut(s) 105, 147
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 43, 191
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 9 cut(s) 108, 162, 186, 198, 214, 228, 234, 240, 244
Lsp1109I GCAGC 2 cut(s) 124, 262
LweI GCATC 2 cut(s) 257, 292
MaeI CTAG 2 cut(s) 65, 126
MalI GATC 2 cut(s) 45, 193
MboI GATC 2 cut(s) 43, 191
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 3 cut(s) 30, 49, 89
MroNI GCCGGC 1 cut(s) 200
MspI CCGG 3 cut(s) 185, 201, 227
NaeI GCCGGC 1 cut(s) 202
NdeII GATC 2 cut(s) 43, 191
NgoMIV GCCGGC 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 24, 255
PflFI GACNNNGTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 3 cut(s) 139, 153, 277
Psp124BI GAGCTC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 165
PsuI RGATCY 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 238
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SacI GAGCTC 1 cut(s) 53
SatI GCNGC 3 cut(s) 138, 152, 276
Sau3AI GATC 2 cut(s) 43, 191
ScaI AGTACT 1 cut(s) 103
SduI GDGCHC 1 cut(s) 53
SetI ASST 3 cut(s) 22, 53, 175
SfaNI GCATC 2 cut(s) 257, 292
SpeI ACTAGT 1 cut(s) 125
SsiI CCGC 1 cut(s) 152
SspMI CTAG 2 cut(s) 65, 126
SstI GAGCTC 1 cut(s) 53
TaqI TCGA 2 cut(s) 22, 242
TatI WGTACW 1 cut(s) 101
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 2 cut(s) 24, 255
TseI GCWGC 2 cut(s) 137, 275
Tth111I GACNNNGTC 1 cut(s) 238
Van91I CCANNNNNTGG 1 cut(s) 176
XspI CTAG 2 cut(s) 65, 126
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.