FvH4_6g39683

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001954
Physical Location & Seq
Reverse (-)
31330672 .. 31331077
406 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39683.t1

Sequence Viewer

Length: 261 bp
ATGAGTTCAAGTGCTAGCTTCACCGCTCCGGCTCCCCAGCAGGGACGTTATATCCAGGCGCCGCCTCCGGCCGGCTATCCCACTATGAAAGACGATCAGTTGCCCCAGAGCCACGGTCCGGTCGAGACCAAGTCCAAGGGCGATGGATTCTGGAAGGGTTGCTGTGCTGCTCTTTGTTGCTGTTTATCTCTTGTGATTGATGTAATTAAGGACTACATATACTGGATATCTATGCCCGATCAAGCATTACTGATCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

87

Amino Acids

9.31

Weight (kDa)

5.51

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 26 - 62 3e-08 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AccBSI CCGCTC 1 cut(s) 26
AciI CCGC 2 cut(s) 24, 62
AcoI YGGCCR 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 59
AfiI CCNNNNNNNGG 3 cut(s) 41, 71, 118
AgsI TTSAA 1 cut(s) 9
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 13
AsuNHI GCTAGC 1 cut(s) 14
AvaII GGWCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 154
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 2 cut(s) 62, 168
BlsI GCNGC 2 cut(s) 63, 169
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 33, 60
BmrFI CCNGG 1 cut(s) 56
BmtI GCTAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 112, 135
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 71, 118
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 227
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 112, 135
BseLI CCNNNNNNNGG 3 cut(s) 41, 71, 118
BseNI ACTGG 1 cut(s) 227
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 36
Bsh1285I CGRYCG 2 cut(s) 72, 123
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 58
BsiEI CGRYCG 2 cut(s) 72, 123
BsiSI CCGG 4 cut(s) 29, 68, 72, 119
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 41, 71, 118
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 94, 238, 252
BspACI CCGC 2 cut(s) 24, 62
BspANI GGCC 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 33, 60
BspOI GCTAGC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 112, 135
BssMI GATC 3 cut(s) 94, 238, 252
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 16, 73
BstDSI CCRYGG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 3 cut(s) 97, 241, 255
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 94, 238, 252
BstMCI CGRYCG 2 cut(s) 72, 123
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 154
BstZI CGGCCG 1 cut(s) 69
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 16, 73
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 116
CpoI CGGWCCG 1 cut(s) 116
CspI CGGWCCG 1 cut(s) 116
CviJI RGCY 5 cut(s) 18, 32, 71, 75, 111
CviKI_1 RGCY 5 cut(s) 18, 32, 71, 75, 111
DinI GGCGCC 1 cut(s) 60
DpnI GATC 3 cut(s) 96, 240, 254
DpnII GATC 3 cut(s) 94, 238, 252
EaeI YGGCCR 1 cut(s) 69
EagI CGGCCG 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 119
Eco32I GATATC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 116
Eco52I CGGCCG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 54
EcoRV GATATC 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 135
FaiI YATR 5 cut(s) 51, 86, 218, 220, 233
FaqI GGGAC 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 62, 168
Fsp4HI GCNGC 2 cut(s) 62, 168
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 62, 168
GsaI CCCAGC 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 1 cut(s) 71
HapII CCGG 4 cut(s) 29, 68, 72, 119
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 59
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 1 cut(s) 147
HpaII CCGG 4 cut(s) 29, 68, 72, 119
HphI GGTGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 124, 151
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 59
HspAI GCGC 1 cut(s) 59
KasI GGCGCC 1 cut(s) 58
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 3 cut(s) 94, 238, 252
LmnI GCTCC 2 cut(s) 31, 37
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 46
MalI GATC 3 cut(s) 96, 240, 254
MbiI CCGCTC 1 cut(s) 26
MboI GATC 3 cut(s) 94, 238, 252
MluCI AATT 1 cut(s) 204
Mly113I GGCGCC 1 cut(s) 59
MnlI CCTC 1 cut(s) 75
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 1 cut(s) 207
MspI CCGG 4 cut(s) 29, 68, 72, 119
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
NaeI GCCGGC 1 cut(s) 73
NarI GGCGCC 1 cut(s) 59
NdeII GATC 3 cut(s) 94, 238, 252
NgoMIV GCCGGC 1 cut(s) 71
NheI GCTAGC 1 cut(s) 14
NlaIV GGNNCC 2 cut(s) 33, 60
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 130
PkrI GCNGC 2 cut(s) 63, 169
PluTI GGCGCC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 54
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 33, 60
PspPI GGNCC 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 130
Rsr2I CGGWCCG 1 cut(s) 116
RsrII CGGWCCG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 62, 168
Sau3AI GATC 3 cut(s) 94, 238, 252
Sau96I GGNCC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 56
SetI ASST 2 cut(s) 20, 49
SfoI GGCGCC 1 cut(s) 60
SinI GGWCC 1 cut(s) 116
Sse9I AATT 1 cut(s) 204
SsiI CCGC 2 cut(s) 24, 62
SspDI GGCGCC 1 cut(s) 58
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 101
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 116
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.