RchiOBHm_Chr2g0153751

CYSTM1 family protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001954
Physical Location & Seq
Reverse (-)
71037812 .. 71038438
627 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52282

Sequence Viewer

Length: 219 bp
ATGAGTTCAAGTGCTAACTCCGCAGCAGCGTACCCCGCTCCGGCTTCCCAACAGGGACGTTACGTCCAGGCGCCACCTCCTGCCGGCTATCCCACCATGACAGACGATCAGTTGCCCCAGAGCCGCGGTCCAGTCGAGACCAAGCCGAAGGGAGATGGATTCTGGAAGGGTTGCTGTGCTGCTCTTTGTTGCTGTTGTATGTTGGATGCTTGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

72

Amino Acids

7.51

Weight (kDa)

5.94

Isoelectric Point (pI)

69.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 25 - 72 3.6e-10 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccBSI CCGCTC 1 cut(s) 38
AccII CGCG 1 cut(s) 126
AciI CCGC 4 cut(s) 21, 36, 124, 126
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 40, 83
AgsI TTSAA 1 cut(s) 9
AhdI GACNNNNNGTC 1 cut(s) 62
AjnI CCWGG 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 131
ApeKI GCWGC 3 cut(s) 23, 26, 179
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 128
AvaII GGWCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 70
BbvI GCAGC 3 cut(s) 35, 38, 166
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 74
BisI GCNGC 4 cut(s) 24, 27, 124, 180
BlsI GCNGC 4 cut(s) 25, 28, 125, 181
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 128
BmeRI GACNNNNNGTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 196
BsaHI GRCGYC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 83
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 40, 83
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 3 cut(s) 35, 38, 166
Bsh1236I CGCG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 70
BsiSI CCGG 2 cut(s) 41, 84
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 40, 83
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 4 cut(s) 21, 36, 124, 126
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 131
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 85, 211
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 20, 35
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 35, 38, 166
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 85, 211
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 128
Cfr42I CCGCGG 1 cut(s) 127
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 97
CviJI RGCY 4 cut(s) 44, 87, 123, 145
CviKI_1 RGCY 4 cut(s) 44, 87, 123, 145
CviQI GTAC 1 cut(s) 31
DinI GGCGCC 1 cut(s) 72
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DriI GACNNNNNGTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 66
EgeI GGCGCC 1 cut(s) 72
EheI GGCGCC 1 cut(s) 72
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 98, 200
FaqI GGGAC 1 cut(s) 69
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 24, 27, 124, 180
Fsp4HI GCNGC 4 cut(s) 24, 27, 124, 180
GlaI GCGC 1 cut(s) 72
GluI GCNGC 4 cut(s) 24, 27, 124, 180
HaeII RGCGCY 1 cut(s) 74
HapII CCGG 2 cut(s) 41, 84
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 41, 84
Hpy188III TCNNGA 2 cut(s) 136, 163
HpyAV CCTTC 2 cut(s) 142, 160
HpyCH4IV ACGT 2 cut(s) 58, 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 35
HpySE526I ACGT 2 cut(s) 58, 63
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 1 cut(s) 71
KasI GGCGCC 1 cut(s) 70
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
KspI CCGCGG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 9 cut(s) 38, 53, 54, 80, 93, 97, 131, 144, 148
Lsp1109I GCAGC 3 cut(s) 35, 38, 166
LweI GCATC 1 cut(s) 196
MaeII ACGT 2 cut(s) 58, 63
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 108
MbiI CCGCTC 1 cut(s) 38
MboI GATC 1 cut(s) 106
Mly113I GGCGCC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 1 cut(s) 87
MroNI GCCGGC 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 2 cut(s) 41, 84
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 20, 35
NaeI GCCGGC 1 cut(s) 85
NarI GGCGCC 1 cut(s) 71
NdeII GATC 1 cut(s) 106
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 4 cut(s) 25, 28, 125, 181
PluTI GGCGCC 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 128
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SacII CCGCGG 1 cut(s) 127
SatI GCNGC 4 cut(s) 24, 27, 124, 180
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 68
SetI ASST 3 cut(s) 61, 66, 79
SfaNI GCATC 1 cut(s) 196
SfoI GGCGCC 1 cut(s) 72
Sfr303I CCGCGG 1 cut(s) 127
SgrBI CCGCGG 1 cut(s) 127
SinI GGWCC 1 cut(s) 128
SsiI CCGC 4 cut(s) 21, 36, 124, 126
SspDI GGCGCC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 66
TaiI ACGT 2 cut(s) 61, 66
TaqI TCGA 1 cut(s) 135
TauI GCSGC 1 cut(s) 126
TfiI GAWTC 1 cut(s) 159
TseI GCWGC 3 cut(s) 23, 26, 179
VpaK11BI GGWCC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.