Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001954

Physical Location & Seq

Genomic Coordinates Forward (+)

19441514 .. 19442089

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G185500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGATCGTCGACTAATTCACCAGCAGCAGCAGCAGCAGCATACCCTCATCCCCAACCTTATTCGACAGCACCGGCACTGGGACCTTCTTACGTGCAGGCTCCGCCACCTGCTGGTTATCCCACAAGAGATGCTCCAAATCCTGCTTCTGCTCATTATGGACCTGTAGAAACCAAGTCCAAGGGTGATGGCTTCTGGAAAGGATGCTGTGCTGCCTTGTGTTGTTGTTGTCTCTTGGATGCCTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CYSTM

Protein Analysis

84

Amino Acids

8.41

Weight (kDa)

6.67

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05340 AT2G32190 AT2G32190 AT2G32200 AT2G32200 AT2G32210 AT2G32210 AT2G32210 AT3G22231 AT3G22235 AT3G22235 AT3G22240
fragaria_vesca	FvH4_1g21001 FvH4_6g39683
malus_domestica	MD01G1028400.v1.1 MD09G1137600.v1.1 MD17G1127900.v1.1
prunus_persica	Prupe.3G187200_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.3G187300_v2.0.a1 Prupe.6G185000_v2.0.a1 Prupe.6G185100_v2.0.a1 Prupe.6G185200_v2.0.a1 Prupe.6G185300_v2.0.a1 Prupe.6G185400_v2.0.a1 Prupe.6G185500_v2.0.a1 Prupe.6G185600_v2.0.a1
pyrus_communis	pycom09g05870 pycom17g12030
rosa_chinensis	RchiOBHm_Chr2g0114501 RchiOBHm_Chr2g0114521 RchiOBHm_Chr2g0153711 RchiOBHm_Chr2g0153751
rosa_laevigata	RLG00000020722
rosa_multiflora	Rmu_sc0015718.1_g000007
rosa_roxburghii	Rroxscaffold_2G00130230 Rroxscaffold_2G00130260
rosa_rugosa	Rorug02G0441600
rosa_samantha	Rh2AG248300 Rh2AG505100 Rh2BG257900 Rh2CG251600 Rh2DG256300
rosa_wichuraiana	Rw2G019300 Rw7G035710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	118
Acc36I	ACCTGC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	80, 113
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	13
ApeKI	GCWGC	6 cut(s)	26, 29, 32, 35, 38, 212
AspS9I	GGNCC	2 cut(s)	83, 161
AsuHPI	GGTGA	2 cut(s)	12, 197
AvaII	GGWCC	2 cut(s)	83, 161
BbvI	GCAGC	6 cut(s)	38, 41, 44, 47, 50, 199
BccI	CCATC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	118
BisI	GCNGC	6 cut(s)	27, 30, 33, 36, 39, 213
BlsI	GCNGC	6 cut(s)	28, 31, 34, 37, 40, 214
Bme18I	GGWCC	2 cut(s)	83, 161
BmgT120I	GGNCC	2 cut(s)	83, 161
BmiI	GGNNCC	2 cut(s)	84, 102
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	3 cut(s)	121, 194, 229
BmuI	ACTGGG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 113
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	49, 209, 244
BseLI	CCNNNNNNNGG	2 cut(s)	80, 113
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	6 cut(s)	38, 41, 44, 47, 50, 199
BsgI	GTGCAG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	80, 113
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	84, 102
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	49, 209, 244
BstKTI	GATC	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 35, 38, 103
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	6 cut(s)	38, 41, 44, 47, 50, 199
BtsCI	GGATG	3 cut(s)	49, 209, 244
BtsIMutI	CAGTG	1 cut(s)	77
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	83, 161
CviJI	RGCY	2 cut(s)	101, 192
CviKI_1	RGCY	2 cut(s)	101, 192
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	83, 161
EcoO109I	RGGNCCY	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaiI	YATR	2 cut(s)	43, 159
FaqI	GGGAC	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	6 cut(s)	27, 30, 33, 36, 39, 213
FokI	GGATG	2 cut(s)	36, 216
Fsp4HI	GCNGC	6 cut(s)	27, 30, 33, 36, 39, 213
GluI	GCNGC	6 cut(s)	27, 30, 33, 36, 39, 213
HapII	CCGG	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	12, 197
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 35, 38, 103
HpySE526I	ACGT	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	106, 139
LpnPI	CCDG	9 cut(s)	36, 65, 83, 87, 99, 123, 156, 177, 181
Lsp1109I	GCAGC	6 cut(s)	38, 41, 44, 47, 50, 199
LweI	GCATC	3 cut(s)	121, 194, 229
MaeII	ACGT	1 cut(s)	93
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MluCI	AATT	1 cut(s)	16
MnlI	CCTC	1 cut(s)	57
MspI	CCGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	4 cut(s)	32, 35, 38, 103
NdeII	GATC	1 cut(s)	5
NlaIV	GGNNCC	2 cut(s)	84, 102
PaqCI	CACCTGC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	6 cut(s)	28, 31, 34, 37, 40, 214
Ppu21I	YACGTR	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	84, 102
PspPI	GGNCC	2 cut(s)	83, 161
PspPPI	RGGWCCY	1 cut(s)	83
SalI	GTCGAC	1 cut(s)	10
SatI	GCNGC	6 cut(s)	27, 30, 33, 36, 39, 213
Sau3AI	GATC	1 cut(s)	5
Sau96I	GGNCC	2 cut(s)	83, 161
SetI	ASST	5 cut(s)	61, 88, 96, 112, 166
SfaNI	GCATC	3 cut(s)	121, 194, 229
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	83, 161
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	11, 65
TasI	AATT	1 cut(s)	16
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	6 cut(s)	26, 29, 32, 35, 38, 212
TspRI	CASTG	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	83, 161
XmiI	GTMKAC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.