Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Forward (+)

15161702 .. 15162790

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTAGGATCAGAAGAAGAATCCAAAAGCGCCATATCCACGAAAACCGCTACATCGATTTCTTTGGAGAACGTTTGATCGTCACGGTCACTCATACTACCTCAACCATCCGCCGTTGGATTCATAGCATCCGTTTCTTCAGCCGTCTTCGCTCCTCACACCCTCTCGTTGTTGGACTCGACGTCCAATGGACACCCGGTGGTTCCGATCCTCCACCGGATATTCTCCAACTATGTGTTGGTAACCGCTGTCTCATCATCCAGTTGTCTCACTGTAAACGCATTCCTGAGGTCCTTCGAAGTTTCTTGGAAGATGAGACAATCACTTTTGTCGGCGTCTGGAACAGCCAAGACCAGGGCAAGCTCGAAAGATTCCGCCATCAGTTGGAGATATGGAGACTTCTAGACATAAGGCACTATCTGCCTACGAGGCTCCTCAATAGTTCGTTTGAGAAGATTGTAGAGGAGTGTTTGGGGTACAAGGGAGTGAGGAAAGATAAGGAGATATGTATGAGTAATTGGGGTGCTCGTAGCCTTTCCCATGATCAGATTGTTCAGGCGTCAGATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAATGTATCTGGAAAGAGCGCTCGAATGTTAAAGAACGTATCTGGAAAGAGAGCTCGAATGTTAAGGAACATATCTGGAAAGAGAGCTCGAAACTTTATTTTGTTGGGGTATGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

239

Amino Acids

28.31

Weight (kDa)

9.36

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	50 - 197	3.9e-12	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccB7I	CCANNNNNTGG	1 cut(s)	385
AciI	CCGC	4 cut(s)	49, 112, 247, 376
AclI	AACGTT	1 cut(s)	73
AclWI	GGATC	2 cut(s)	17, 203
AcuI	CTGAAG	1 cut(s)	124
AcyI	GRCGYC	3 cut(s)	183, 336, 560
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	479
AfeI	AGCGCT	1 cut(s)	620
AfiI	CCNNNNNNNGG	2 cut(s)	355, 385
AhdI	GACNNNNNGTC	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	4 cut(s)	364, 589, 654, 687
AluI	AGCT	4 cut(s)	364, 589, 654, 687
Alw21I	GWGCWC	3 cut(s)	529, 656, 689
Alw26I	GTCTC	4 cut(s)	257, 273, 311, 391
AlwI	GGATC	2 cut(s)	17, 203
Aor51HI	AGCGCT	1 cut(s)	620
ApeKI	GCWGC	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	33, 621
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	198
AsuII	TTCGAA	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	292
AxyI	CCTNAGG	1 cut(s)	288
BanII	GRGCYC	2 cut(s)	656, 689
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	3 cut(s)	529, 656, 689
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	2 cut(s)	116, 387
BceAI	ACGGC	2 cut(s)	99, 129
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	4 cut(s)	257, 273, 311, 391
BfaI	CTAG	2 cut(s)	6, 404
BfoI	RGCGCY	2 cut(s)	34, 622
BglI	GCCNNNNNGGC	1 cut(s)	430
BisI	GCNGC	1 cut(s)	583
BlsI	GCNGC	1 cut(s)	584
Bme1390I	CCNGG	2 cut(s)	198, 356
Bme18I	GGWCC	1 cut(s)	292
BmeRI	GACNNNNNGTC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	205, 434
BmrFI	CCNGG	2 cut(s)	198, 356
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	57
BsaHI	GRCGYC	3 cut(s)	183, 336, 560
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 385
Bse1I	ACTGG	1 cut(s)	262
Bse21I	CCTNAGG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	3 cut(s)	108, 129, 258
BseLI	CCNNNNNNNGG	2 cut(s)	355, 385
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	3 cut(s)	145, 425, 479
BseXI	GCAGC	1 cut(s)	569
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	3 cut(s)	529, 656, 689
BsiSI	CCGG	2 cut(s)	198, 218
BslI	CCNNNNNNNGG	2 cut(s)	355, 385
BsmAI	GTCTC	4 cut(s)	257, 273, 311, 391
BsmI	GAATGC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	298
Bsp1286I	GDGCHC	3 cut(s)	529, 656, 689
Bsp143I	GATC	4 cut(s)	9, 78, 208, 544
BspACI	CCGC	4 cut(s)	49, 112, 247, 376
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	205, 434
BspPI	GGATC	2 cut(s)	17, 203
BspT104I	TTCGAA	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	4 cut(s)	9, 78, 208, 544
BssNI	GRCGYC	3 cut(s)	183, 336, 560
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	88, 275
BstACI	GRCGYC	3 cut(s)	183, 336, 560
BstAPI	GCANNNNNTGC	1 cut(s)	421
BstBI	TTCGAA	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	362, 587
BstDEI	CTNAG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	3 cut(s)	108, 129, 258
BstH2I	RGCGCY	2 cut(s)	34, 622
BstHHI	GCGC	2 cut(s)	33, 621
BstKTI	GATC	4 cut(s)	12, 81, 211, 547
BstMAI	GTCTC	4 cut(s)	257, 273, 311, 391
BstMBI	GATC	4 cut(s)	9, 78, 208, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 421, 430
BstNI	CCWGG	1 cut(s)	356
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	196, 354
BstV1I	GCAGC	1 cut(s)	569
BstV2I	GAAGAC	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	57
Bsu36I	CCTNAGG	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	108, 129, 258
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	362, 587
CfoI	GCGC	2 cut(s)	33, 621
Cfr13I	GGNCC	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	2 cut(s)	325, 549
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	1 cut(s)	542
CviJI	RGCY	9 cut(s)	5, 144, 348, 364, 433, 534, 589, 654, 687
CviKI_1	RGCY	9 cut(s)	5, 144, 348, 364, 433, 534, 589, 654, 687
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	4 cut(s)	11, 80, 210, 546
DpnII	GATC	4 cut(s)	9, 78, 208, 544
DraIII	CACNNNGTG	1 cut(s)	200
DriI	GACNNNNNGTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	182
EciI	GGCGGA	2 cut(s)	101, 365
Ecl136II	GAGCTC	2 cut(s)	654, 687
Eco24I	GRGCYC	2 cut(s)	656, 689
Eco47I	GGWCC	1 cut(s)	292
Eco47III	AGCGCT	1 cut(s)	620
Eco53kI	GAGCTC	2 cut(s)	654, 687
Eco57I	CTGAAG	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	288
Eco91I	GGTNACC	1 cut(s)	242
EcoICRI	GAGCTC	2 cut(s)	654, 687
EcoO109I	RGGNCCY	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	354
EcoT38I	GRGCYC	2 cut(s)	656, 689
FaeI	CATG	1 cut(s)	545
FatI	CATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	583
FokI	GGATG	3 cut(s)	95, 116, 245
FriOI	GRGCYC	2 cut(s)	656, 689
Fsp4HI	GCNGC	1 cut(s)	583
FspBI	CTAG	2 cut(s)	6, 404
GlaI	GCGC	2 cut(s)	32, 620
GluI	GCNGC	1 cut(s)	583
HaeII	RGCGCY	2 cut(s)	34, 622
HapII	CCGG	2 cut(s)	198, 218
HgaI	GACGC	2 cut(s)	325, 549
HhaI	GCGC	2 cut(s)	33, 621
Hin1I	GRCGYC	3 cut(s)	183, 336, 560
Hin1II	CATG	1 cut(s)	545
Hin6I	GCGC	2 cut(s)	31, 619
HinP1I	GCGC	2 cut(s)	31, 619
HinfI	GANTC	4 cut(s)	21, 121, 177, 372
HpaII	CCGG	2 cut(s)	198, 218
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	5 cut(s)	14, 208, 549, 565, 719
Hpy188III	TCNNGA	6 cut(s)	287, 340, 404, 610, 643, 676
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	2 cut(s)	88, 275
HpyCH4IV	ACGT	3 cut(s)	73, 183, 637
HpyCH4V	TGCA	1 cut(s)	585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 421, 430
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	3 cut(s)	73, 183, 637
Hsp92I	GRCGYC	3 cut(s)	183, 336, 560
Hsp92II	CATG	1 cut(s)	545
HspAI	GCGC	2 cut(s)	31, 619
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	4 cut(s)	9, 78, 208, 544
LmnI	GCTCC	2 cut(s)	158, 438
Lsp1109I	GCAGC	1 cut(s)	569
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	6, 404
MaeII	ACGT	3 cut(s)	73, 183, 637
MaeIII	GTNAC	3 cut(s)	82, 88, 242
MalI	GATC	4 cut(s)	11, 80, 210, 546
MboI	GATC	4 cut(s)	9, 78, 208, 544
MboII	GAAGA	6 cut(s)	27, 30, 130, 140, 323, 466
MhlI	GDGCHC	3 cut(s)	529, 656, 689
MluCI	AATT	1 cut(s)	517
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	4 cut(s)	98, 154, 253, 366
MnlI	CCTC	9 cut(s)	112, 166, 174, 222, 283, 423, 446, 457, 483
MseI	TTAA	3 cut(s)	597, 630, 663
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	2 cut(s)	198, 218
MspR9I	CCNGG	2 cut(s)	198, 356
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	150, 421, 430
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	9, 78, 208, 544
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	2 cut(s)	205, 434
NmuCI	GTSAC	2 cut(s)	82, 88
NspV	TTCGAA	1 cut(s)	298
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	21, 121, 372
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	584
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	292
Psp124BI	GAGCTC	2 cut(s)	656, 689
Psp1406I	AACGTT	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	354
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	205, 434
PspPI	GGNCC	1 cut(s)	292
PspPPI	RGGWCCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SacI	GAGCTC	2 cut(s)	656, 689
SaqAI	TTAA	3 cut(s)	597, 630, 663
SatI	GCNGC	1 cut(s)	583
Sau3AI	GATC	4 cut(s)	9, 78, 208, 544
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	198, 356
SduI	GDGCHC	3 cut(s)	529, 656, 689
SetI	ASST	9 cut(s)	76, 104, 186, 294, 366, 591, 640, 656, 689
SfaNI	GCATC	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	298
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	1 cut(s)	517
SsiI	CCGC	4 cut(s)	49, 112, 247, 376
SspMI	CTAG	2 cut(s)	6, 404
SstI	GAGCTC	2 cut(s)	656, 689
StyD4I	CCNGG	2 cut(s)	196, 354
TaaI	ACNGT	2 cut(s)	88, 275
TaiI	ACGT	3 cut(s)	76, 186, 640
TaqI	TCGA	7 cut(s)	57, 180, 298, 366, 623, 656, 689
TasI	AATT	1 cut(s)	517
TfiI	GAWTC	3 cut(s)	21, 121, 372
Tru1I	TTAA	3 cut(s)	597, 630, 663
Tru9I	TTAA	3 cut(s)	597, 630, 663
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	2 cut(s)	82, 88
TseI	GCWGC	1 cut(s)	582
Tsp45I	GTSAC	2 cut(s)	82, 88
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	292
XbaI	TCTAGA	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XspI	CTAG	2 cut(s)	6, 404
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.