Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

3907700 .. 3908649

Gene Structure 950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCTCTTAGAGGCAAGTTCAAGTTATTCCCCATTGAATTTTACGAAGATCGCATCCGAACTATTCTGACATCAGACGCACCTAGTGTAGACCAGTGGATTGATGATATTTATCACGACATAGGTCACAATAAGTCTATTGTGGGTCTTGATACTGAATGGCAATGGAACCCTGAAACTCAATATCAAGAAGTTGCAGTTCTTCAACTTTGTGTAGGTCATAATTGCCTAATTTATCAACTGTCCCAATCAAAAAGCATTCCGCAATCGCTCATCAAATTCCTCGGTGATGAAAACCTGACCTTTGTTGGTAAGGAAGTTTGTGGGGATGTCGCTCGTTTGGCTCGTCAAGGTCTATATGTAAAATGTGCTATGGATGTCGCATATATGGCTGCAGAGAAATACGAACGTATGGCTGCAGAAAAATACAAAGAAGATATCTACAAAGACTACAAGTCCATGGGATTGAAGACCTTGGCGATGGAGTTTCTAAACAAGGAGATGGAGAAGGATAAGAAACTTACAAGGAGTCGTTGGGGTAATGAACGACTCACTTACTATCAAGTGAAATATGCTTGCATAGATGCTTTTGTTTCGTTTCAACTAGGAATCAGATTACAAACGCCCTACTCAAGTGAAGAAAGAGCGAAATGTATCGCCGAGACAAAGAAGTTTTGCATGAATGCATTTTCATCAAGAAAGTCCAACCGCAAGAAAAATCACATTAAGAAATTACAAGAGGAATTATTAGCTGGTATTGGGGATTTCAGCAAAATTGTACCAACGGGCTGGGACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

267

Amino Acids

30.86

Weight (kDa)

8.52

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	44 - 206	6e-15	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	2 cut(s)	263, 709
AcsI	RAATTY	2 cut(s)	38, 278
AdeI	CACNNNGTG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	780
AgsI	TTSAA	5 cut(s)	22, 38, 206, 469, 602
AhdI	GACNNNNNGTC	1 cut(s)	454
AluBI	AGCT	1 cut(s)	752
AluI	AGCT	1 cut(s)	752
Alw26I	GTCTC	1 cut(s)	656
ApeKI	GCWGC	2 cut(s)	392, 416
ApoI	RAATTY	2 cut(s)	38, 278
AsuHPI	GGTGA	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	379, 403
BccI	CCATC	2 cut(s)	475, 496
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	2 cut(s)	84, 605
BfmI	CTRYAG	2 cut(s)	393, 417
BisI	GCNGC	2 cut(s)	393, 417
BlsI	GCNGC	2 cut(s)	394, 418
BmeRI	GACNNNNNGTC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	170
BmsI	GCATC	2 cut(s)	63, 574
BoxI	GACNNNNGTC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	616
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	283, 459, 474
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	283, 459, 474
BseGI	GGATG	3 cut(s)	54, 334, 382
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	379, 403
BseYI	CCCAGC	1 cut(s)	789
BslFI	GGGAC	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	2 cut(s)	258, 688
Bsp143I	GATC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	2 cut(s)	263, 709
BspLI	GGNNCC	1 cut(s)	170
BspMAI	CTGCAG	2 cut(s)	397, 421
BsrDI	GCAATG	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	283, 459, 474
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	2 cut(s)	459, 474
Bst4CI	ACNGT	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	3 cut(s)	54, 334, 382
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 389
BstPAI	GACNNNNGTC	1 cut(s)	123
BstSFI	CTRYAG	2 cut(s)	393, 417
BstV1I	GCAGC	2 cut(s)	379, 403
BstV2I	GAAGAC	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	54, 334, 382
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	577
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	779
CviAII	CATG	2 cut(s)	460, 679
CviJI	RGCY	6 cut(s)	5, 344, 392, 416, 752, 789
CviKI_1	RGCY	6 cut(s)	5, 344, 392, 416, 752, 789
CviQI	GTAC	1 cut(s)	779
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DraIII	CACNNNGTG	1 cut(s)	86
DriI	GACNNNNNGTC	1 cut(s)	454
Eam1105I	GACNNNNNGTC	1 cut(s)	454
Eco130I	CCWWGG	2 cut(s)	459, 474
Eco32I	GATATC	1 cut(s)	439
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	459, 474
EcoT22I	ATGCAT	1 cut(s)	688
ErhI	CCWWGG	2 cut(s)	459, 474
FaeI	CATG	2 cut(s)	463, 682
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	2 cut(s)	459, 678
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	393, 417
FokI	GGATG	3 cut(s)	41, 341, 389
Fsp4HI	GCNGC	2 cut(s)	393, 417
FspBI	CTAG	2 cut(s)	84, 605
GluI	GCNGC	2 cut(s)	393, 417
GsaI	CCCAGC	1 cut(s)	793
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	463, 682
HinfI	GANTC	3 cut(s)	529, 549, 609
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	4 cut(s)	59, 69, 76, 614
Hpy188III	TCNNGA	4 cut(s)	116, 149, 188, 696
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	2 cut(s)	409, 795
HpyCH4V	TGCA	6 cut(s)	197, 395, 419, 579, 678, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 389
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	2 cut(s)	409, 795
Hsp92II	CATG	2 cut(s)	463, 682
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	5 cut(s)	107, 186, 311, 738, 775
Lsp1109I	GCAGC	2 cut(s)	379, 403
LweI	GCATC	2 cut(s)	63, 574
MaeI	CTAG	2 cut(s)	84, 605
MaeII	ACGT	2 cut(s)	409, 795
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	5 cut(s)	59, 194, 446, 481, 650
MluCI	AATT	7 cut(s)	38, 223, 231, 278, 731, 743, 774
MlyI	GAGTC	2 cut(s)	538, 543
MmeI	TCCRAC	1 cut(s)	729
MnlI	CCTC	3 cut(s)	5, 293, 733
Mph1103I	ATGCAT	1 cut(s)	688
MseI	TTAA	2 cut(s)	726, 799
Mva1269I	GAATGC	2 cut(s)	258, 688
MwoI	GCNNNNNNNGC	2 cut(s)	341, 389
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	463, 682
NlaIV	GGNNCC	1 cut(s)	170
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	1 cut(s)	125
NsiI	ATGCAT	1 cut(s)	688
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PctI	GAATGC	2 cut(s)	258, 688
PfeI	GAWTC	1 cut(s)	609
PkrI	GCNGC	2 cut(s)	394, 418
PleI	GAGTC	2 cut(s)	537, 543
PpsI	GAGTC	2 cut(s)	537, 543
PshAI	GACNNNNGTC	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	789
PspN4I	GGNNCC	1 cut(s)	170
PstI	CTGCAG	2 cut(s)	397, 421
RsaI	GTAC	1 cut(s)	780
RsaNI	GTAC	1 cut(s)	779
SaqAI	TTAA	2 cut(s)	726, 799
SatI	GCNGC	2 cut(s)	393, 417
Sau3AI	GATC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	538, 543
SfaNI	GCATC	2 cut(s)	63, 574
SfcI	CTRYAG	2 cut(s)	393, 417
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	7 cut(s)	38, 223, 231, 278, 731, 743, 774
SsiI	CCGC	2 cut(s)	263, 709
SspMI	CTAG	2 cut(s)	84, 605
StyI	CCWWGG	2 cut(s)	459, 474
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	2 cut(s)	412, 798
TasI	AATT	7 cut(s)	38, 223, 231, 278, 731, 743, 774
TfiI	GAWTC	1 cut(s)	609
Tru1I	TTAA	2 cut(s)	726, 799
Tru9I	TTAA	2 cut(s)	726, 799
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	392, 416
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	4 cut(s)	306, 558, 681, 695
TspRI	CASTG	1 cut(s)	101
XapI	RAATTY	2 cut(s)	38, 278
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	84, 605
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.