Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

3951108 .. 3952260

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTCCGAGAATCAGGAGCATCGGAAGTTACGCAACTCAGGGAAAGTTCTCTGTCGATTTCTTCGGAGACGAGTTCATCGTCACCGTAACTTCGGATCCTTCCGTCATCGGCCAATGGATTCACGACGTCCTCCGCTTCTCCTCTCGCCCTCTCGTCGTTGGAGTCGGCGTGCAATGGACACCACATCCTACTTCTCCACCGGCTAGGTATCACTCTCCGGTTAGTTATCACTCCGATTCTTCGCCGGTTACTCATCACTATGATTCTCCGCCGGTTTGTTATCGCTCAGACTCTCCGCCGGCTCAATATTGCTCTGTTTCTCCGCCGGCTCGTTATAGCTCAGACTCTCCGCCTGCTCAATACCGCTCCGTTTCTCCGCCTGCTCAATATCGCTCCGTTTCTCCACCGGCTCTTTATCGCTCTGTTTCTCCACCAGCTCGTTATCGTTCCGTTTCTCCGCCGGTTCGTTATCGCTCAGACTCTCCGCCGGCTCAATTTCGCTCTGTTTCTCCGCCGGCTCGTTATCTCTCTGACTCTCCGCTAGTTCGTTATCGCTCCGTTTCTCCACCAGCTCGTTATCTATCTGTTTCTCCACCAGCTCGTTATCGCTCCGTTTCTCCACCGGCTCGCTCTGATCCTCCGGCGAATACTCTACAGCTATGCGTTGGTAATCGATGTATCATCATTCAGCTTTTTTACTGTAACCGCGTCCCTCATGTCCTCCGTAGGTTTCTCGGGGATCGAAATCACACCTTCGTGGGTTTTTGGAATAGTCAAGATGCGGGAAAGCTAAAGAGATCTAGACATCGGTTGGAGATTGCAGAGCTTTTGGATTTGAGGAATCACGTTGTAGATTCGAGAGGAAGGGGCTTAAAGGGTCGTTCGTTTGAGGTGGTTGTTGGAGAATGTTTGGGTTATAGAGGAGTAAGGCTAGAGAAGGCGATAGGCATGAGCGATTGGAGCGTTTACGACCTTAGCTACGATCAAATTCTTCAGGCGTCAATAGATGTTTATGTTTGTTCCAAGCTTGGTTTTCGAAATCGTCTATGGGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

353

Amino Acids

39.72

Weight (kDa)

9.82

Isoelectric Point (pI)

79.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccBSI	CCGCTC	1 cut(s)	369
AccII	CGCG	1 cut(s)	711
AclWI	GGATC	4 cut(s)	92, 105, 632, 750
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	990, 1055
AcuI	CTGAAG	1 cut(s)	980
AcyI	GRCGYC	2 cut(s)	129, 1001
AleI	CACNNNNGTG	1 cut(s)	758
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	4 cut(s)	92, 105, 632, 750
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	1 cut(s)	112
ApoI	RAATTY	2 cut(s)	990, 1055
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	1039
AvaI	CYCGRG	1 cut(s)	737
BamHI	GGATCC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	4 cut(s)	207, 545, 804, 935
BfmI	CTRYAG	1 cut(s)	656
BglII	AGATCT	1 cut(s)	800
BmeT110I	CYCGRG	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	6, 99
BmsI	GCATC	2 cut(s)	30, 772
Bpu10I	CCTNAGC	1 cut(s)	977
Bpu14I	TTCGAA	1 cut(s)	1039
Bsa29I	ATCGAT	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	747
BsaHI	GRCGYC	2 cut(s)	129, 1001
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bse3DI	GCAATG	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	747
BseCI	ATCGAT	1 cut(s)	676
BseGI	GGATG	1 cut(s)	187
BseJI	GATNNNNATC	1 cut(s)	747
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	4 cut(s)	53, 303, 357, 492
BseRI	GAGGAG	2 cut(s)	133, 939
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	737
BslFI	GGGAC	1 cut(s)	698
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	698
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	737
Bsp119I	TTCGAA	1 cut(s)	1039
Bsp143I	GATC	5 cut(s)	97, 637, 742, 800, 985
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	4 cut(s)	52, 302, 356, 491
BspDI	ATCGAT	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	711
BspLI	GGNNCC	2 cut(s)	6, 99
BspPI	GGATC	4 cut(s)	92, 105, 632, 750
BspT104I	TTCGAA	1 cut(s)	1039
BsrBI	CCGCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	182
BssMI	GATC	5 cut(s)	97, 637, 742, 800, 985
BssNI	GRCGYC	2 cut(s)	129, 1001
Bst4CI	ACNGT	2 cut(s)	88, 704
BstACI	GRCGYC	2 cut(s)	129, 1001
BstBI	TTCGAA	1 cut(s)	1039
BstC8I	GCNNGC	8 cut(s)	173, 303, 330, 357, 384, 492, 519, 631
BstDEI	CTNAG	5 cut(s)	39, 289, 343, 478, 977
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	711
BstKTI	GATC	5 cut(s)	100, 640, 745, 803, 988
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	5 cut(s)	97, 637, 742, 800, 985
BstMWI	GCNNNNNNNGC	1 cut(s)	963
BstSFI	CTRYAG	1 cut(s)	656
BstUI	CGCG	1 cut(s)	711
BstX2I	RGATCY	2 cut(s)	97, 800
BstYI	RGATCY	2 cut(s)	97, 800
Bsu15I	ATCGAT	1 cut(s)	676
BsuRI	GGCC	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	8 cut(s)	173, 303, 330, 357, 384, 492, 519, 631
ClaI	ATCGAT	1 cut(s)	676
CseI	GACGC	2 cut(s)	700, 990
CviAII	CATG	2 cut(s)	719, 952
DdeI	CTNAG	5 cut(s)	39, 289, 343, 478, 977
DpnI	GATC	5 cut(s)	99, 639, 744, 802, 987
DpnII	GATC	5 cut(s)	97, 637, 742, 800, 985
EaeI	YGGCCR	1 cut(s)	112
EciI	GGCGGA	8 cut(s)	261, 288, 315, 342, 369, 450, 477, 504
Eco57I	CTGAAG	1 cut(s)	980
Eco88I	CYCGRG	1 cut(s)	737
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	722, 955
FaiI	YATR	8 cut(s)	264, 339, 664, 720, 921, 953, 1017, 1051
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	2 cut(s)	718, 951
FauI	CCCGC	1 cut(s)	778
FokI	GGATG	1 cut(s)	174
FspBI	CTAG	4 cut(s)	207, 545, 804, 935
HaeIII	GGCC	1 cut(s)	114
HgaI	GACGC	2 cut(s)	700, 990
Hin1I	GRCGYC	2 cut(s)	129, 1001
Hin1II	CATG	2 cut(s)	722, 955
HindIII	AAGCTT	1 cut(s)	1028
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	970
Hpy188III	TCNNGA	5 cut(s)	16, 125, 779, 804, 861
Hpy8I	GTNNAC	1 cut(s)	970
Hpy99I	CGWCG	2 cut(s)	131, 161
HpyAV	CCTTC	4 cut(s)	111, 766, 861, 934
HpyCH4III	ACNGT	2 cut(s)	88, 704
HpyCH4IV	ACGT	2 cut(s)	129, 849
HpyCH4V	TGCA	2 cut(s)	175, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	963
HpyF3I	CTNAG	5 cut(s)	39, 289, 343, 478, 977
HpySE526I	ACGT	2 cut(s)	129, 849
Hsp92I	GRCGYC	2 cut(s)	129, 1001
Hsp92II	CATG	2 cut(s)	722, 955
KroI	GCCGGC	4 cut(s)	301, 328, 490, 517
KroNI	GCCGGC	4 cut(s)	303, 330, 492, 519
Kzo9I	GATC	5 cut(s)	97, 637, 742, 800, 985
LmnI	GCTCC	7 cut(s)	10, 18, 374, 401, 563, 617, 963
LweI	GCATC	2 cut(s)	30, 772
MaeI	CTAG	4 cut(s)	207, 545, 804, 935
MaeII	ACGT	2 cut(s)	129, 849
MaeIII	GTNAC	5 cut(s)	29, 82, 88, 250, 704
MalI	GATC	5 cut(s)	99, 639, 744, 802, 987
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	5 cut(s)	97, 637, 742, 800, 985
MboII	GAAGA	3 cut(s)	55, 234, 986
MflI	RGATCY	2 cut(s)	97, 800
MluCI	AATT	3 cut(s)	497, 990, 1055
MlyI	GAGTC	5 cut(s)	174, 287, 341, 476, 530
MmeI	TCCRAC	3 cut(s)	142, 795, 883
MroNI	GCCGGC	4 cut(s)	301, 328, 490, 517
MseI	TTAA	1 cut(s)	875
MslI	CAYNNNNRTG	2 cut(s)	261, 758
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	1 cut(s)	963
NaeI	GCCGGC	4 cut(s)	303, 330, 492, 519
NdeII	GATC	5 cut(s)	97, 637, 742, 800, 985
NgoMIV	GCCGGC	4 cut(s)	301, 328, 490, 517
NlaIII	CATG	2 cut(s)	722, 955
NlaIV	GGNNCC	2 cut(s)	6, 99
NmuCI	GTSAC	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	1039
OliI	CACNNNNGTG	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdiI	GCCGGC	4 cut(s)	303, 330, 492, 519
PfeI	GAWTC	6 cut(s)	12, 121, 239, 266, 844, 857
PleI	GAGTC	5 cut(s)	173, 287, 341, 476, 530
PpsI	GAGTC	5 cut(s)	173, 287, 341, 476, 530
PspN4I	GGNNCC	2 cut(s)	6, 99
PsuI	RGATCY	2 cut(s)	97, 800
RseI	CAYNNNNRTG	2 cut(s)	261, 758
SaqAI	TTAA	1 cut(s)	875
Sau3AI	GATC	5 cut(s)	97, 637, 742, 800, 985
SchI	GAGTC	5 cut(s)	174, 287, 341, 476, 530
SfaNI	GCATC	2 cut(s)	30, 772
SfcI	CTRYAG	1 cut(s)	656
SfuI	TTCGAA	1 cut(s)	1039
SmiMI	CAYNNNNRTG	2 cut(s)	261, 758
Sse9I	AATT	3 cut(s)	497, 990, 1055
SspI	AATATT	1 cut(s)	311
SspMI	CTAG	4 cut(s)	207, 545, 804, 935
TaaI	ACNGT	2 cut(s)	88, 704
TaiI	ACGT	2 cut(s)	132, 852
TaqI	TCGA	5 cut(s)	57, 676, 745, 860, 1039
TasI	AATT	3 cut(s)	497, 990, 1055
TfiI	GAWTC	6 cut(s)	12, 121, 239, 266, 844, 857
Tru1I	TTAA	1 cut(s)	875
Tru9I	TTAA	1 cut(s)	875
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	7 cut(s)	94, 361, 388, 442, 550, 604, 716
XapI	RAATTY	2 cut(s)	990, 1055
XbaI	TCTAGA	1 cut(s)	803
XspI	CTAG	4 cut(s)	207, 545, 804, 935
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.