Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

3948014 .. 3949003

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTACGACGATAAGAACCGGCGGTTACTACTCTACTCACCAAGAGTACTCTATCGATGTCTTCGGAAACACGTTATCCGTCACCGTAACTTCGGATTTCGCCATCATCAGCCAATGGATCCATGAGGTTGAATACAACAACTGTCGTCCGTACTATCTACAACCTCTCGTCGTTGGAGTCGGCGTCCAGTGGACACCGCCAGTAAGTTACGACGCCAATCCTCCACCGGATAGGTACTACTCCGATCATCATCCACCGCGTAGTTACGATCCTAATCCTCCACCGAATAGGTACTACTCGGATCATCATCCACCGCATCCTCCGGCGGATACTCTCCAGTTATGCGTGGGTAACCAATGTCTCATCATCCAGTTATGTCACTGTGACCAAGTCCCTACCAGTCTGCGCAGTTTCTTGACCGATCCAAATACCACGTTCGTCGGCGTTTGGAATAGTCAAGACGCAGGAAAGCTGGCGAGATCTAAACATCAGTTAGAGATCGGGAAACTTCTAGACATAAGGACTGAGGCTAGATCCTGCGATAAGCATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

185

Amino Acids

21.01

Weight (kDa)

5.88

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	410
AccII	CGCG	1 cut(s)	262
AciI	CCGC	5 cut(s)	24, 200, 260, 317, 329
AclWI	GGATC	6 cut(s)	115, 128, 266, 312, 419, 531
AcyI	GRCGYC	2 cut(s)	186, 216
AfaI	GTAC	4 cut(s)	50, 155, 239, 296
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	1 cut(s)	475
AluI	AGCT	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	6 cut(s)	115, 128, 266, 312, 419, 531
AspLEI	GCGC	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	32, 76
BamHI	GGATCC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	55
BccI	CCATC	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	515, 534
BfuI	GTATCC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	482
BmcAI	AGTACT	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	122
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	57
BsaBI	GATNNNNATC	3 cut(s)	252, 276, 309
BsaHI	GRCGYC	2 cut(s)	186, 216
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	5 cut(s)	190, 203, 340, 373, 402
Bse8I	GATNNNNATC	3 cut(s)	252, 276, 309
BseCI	ATCGAT	1 cut(s)	57
BseGI	GGATG	4 cut(s)	253, 310, 319, 369
BseJI	GATNNNNATC	3 cut(s)	252, 276, 309
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	5 cut(s)	190, 203, 340, 373, 402
Bsh1236I	CGCG	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	21, 230, 326
BslFI	GGGAC	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	380
Bsp143I	GATC	8 cut(s)	120, 247, 271, 304, 424, 482, 501, 536
BspACI	CCGC	5 cut(s)	24, 200, 260, 317, 329
BspCNI	CTCAG	1 cut(s)	520
BspDI	ATCGAT	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	122
BspPI	GGATC	6 cut(s)	115, 128, 266, 312, 419, 531
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	5 cut(s)	190, 203, 340, 373, 402
BssAI	RCCGGY	1 cut(s)	20
BssMI	GATC	8 cut(s)	120, 247, 271, 304, 424, 482, 501, 536
BssNI	GRCGYC	2 cut(s)	186, 216
Bst4CI	ACNGT	3 cut(s)	88, 146, 386
BstACI	GRCGYC	2 cut(s)	186, 216
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	1 cut(s)	528
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	4 cut(s)	253, 310, 319, 369
BstFNI	CGCG	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	8 cut(s)	123, 250, 274, 307, 427, 485, 504, 539
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	8 cut(s)	120, 247, 271, 304, 424, 482, 501, 536
BstPI	GGTNACC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	3 cut(s)	120, 482, 536
BstYI	RGATCY	3 cut(s)	120, 482, 536
Bsu15I	ATCGAT	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	325
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	4 cut(s)	253, 310, 319, 369
BtsIMutI	CAGTG	2 cut(s)	197, 382
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	3 cut(s)	175, 224, 473
Csp6I	GTAC	4 cut(s)	49, 154, 238, 295
CviAII	CATG	2 cut(s)	125, 551
CviJI	RGCY	4 cut(s)	5, 114, 475, 533
CviKI_1	RGCY	4 cut(s)	5, 114, 475, 533
CviQI	GTAC	4 cut(s)	49, 154, 238, 295
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	8 cut(s)	122, 249, 273, 306, 426, 484, 503, 538
DpnII	GATC	8 cut(s)	120, 247, 271, 304, 424, 482, 501, 536
EciI	GGCGGA	1 cut(s)	344
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
FaeI	CATG	2 cut(s)	128, 554
FaiI	YATR	5 cut(s)	126, 346, 379, 521, 552
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	2 cut(s)	124, 550
FokI	GGATG	4 cut(s)	240, 297, 306, 356
FspBI	CTAG	2 cut(s)	515, 534
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	323
HapII	CCGG	3 cut(s)	21, 230, 326
HgaI	GACGC	3 cut(s)	175, 224, 473
HhaI	GCGC	1 cut(s)	411
Hin1I	GRCGYC	2 cut(s)	186, 216
Hin1II	CATG	2 cut(s)	128, 554
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	3 cut(s)	21, 230, 326
HphI	GGTGA	2 cut(s)	32, 76
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	4 cut(s)	68, 97, 247, 304
Hpy188III	TCNNGA	4 cut(s)	418, 461, 505, 515
Hpy8I	GTNNAC	1 cut(s)	195
Hpy99I	CGWCG	4 cut(s)	13, 176, 218, 446
HpyCH4III	ACNGT	3 cut(s)	88, 146, 386
HpyCH4IV	ACGT	2 cut(s)	74, 437
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	2 cut(s)	74, 437
Hsp92I	GRCGYC	2 cut(s)	186, 216
Hsp92II	CATG	2 cut(s)	128, 554
HspAI	GCGC	1 cut(s)	409
Kzo9I	GATC	8 cut(s)	120, 247, 271, 304, 424, 482, 501, 536
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	2 cut(s)	515, 534
MaeII	ACGT	2 cut(s)	74, 437
MaeIII	GTNAC	8 cut(s)	26, 82, 88, 209, 266, 353, 380, 386
MalI	GATC	8 cut(s)	122, 249, 273, 306, 426, 484, 503, 538
MboI	GATC	8 cut(s)	120, 247, 271, 304, 424, 482, 501, 536
MboII	GAAGA	1 cut(s)	55
MflI	RGATCY	3 cut(s)	120, 482, 536
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	121, 177, 234, 291, 333, 523
MspI	CCGG	3 cut(s)	21, 230, 326
MvnI	CGCG	1 cut(s)	262
NdeII	GATC	8 cut(s)	120, 247, 271, 304, 424, 482, 501, 536
NlaIII	CATG	2 cut(s)	128, 554
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	3 cut(s)	82, 380, 386
NsbI	TGCGCA	1 cut(s)	410
PflFI	GACNNNGTC	1 cut(s)	392
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	122
PsuI	RGATCY	3 cut(s)	120, 482, 536
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	4 cut(s)	50, 155, 239, 296
RsaNI	GTAC	4 cut(s)	49, 154, 238, 295
Sau3AI	GATC	8 cut(s)	120, 247, 271, 304, 424, 482, 501, 536
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	189
SetI	ASST	7 cut(s)	77, 132, 169, 239, 296, 440, 477
SfaNI	GCATC	1 cut(s)	328
SsiI	CCGC	5 cut(s)	24, 200, 260, 317, 329
SspMI	CTAG	2 cut(s)	515, 534
TaaI	ACNGT	3 cut(s)	88, 146, 386
TaiI	ACGT	2 cut(s)	77, 440
TaqI	TCGA	1 cut(s)	57
TaqII	GACCGA	1 cut(s)	437
TatI	WGTACW	1 cut(s)	48
TscAI	CASTG	2 cut(s)	197, 389
TseFI	GTSAC	3 cut(s)	82, 380, 386
Tsp45I	GTSAC	3 cut(s)	82, 380, 386
TspGWI	ACGGA	2 cut(s)	70, 141
TspRI	CASTG	2 cut(s)	197, 389
Tth111I	GACNNNGTC	1 cut(s)	392
XbaI	TCTAGA	1 cut(s)	514
XspI	CTAG	2 cut(s)	515, 534
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.