Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

3946036 .. 3947039

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTTCCCCGACGATAAGAACCGTCGCAAGTTACAACACTCACCTAGAGTACTCCGTCGATTTCTTTGGAGACGAGTTCATCGTCACCGTAACGTGGGATTCTTCCGTCATCAGCCGTTGGATTCGCAACGTCCTCTTCAACAACCGTTTCTCCTCTCACCCTCTCGTCGTTGGAGTTGGCGTCCAGTGGACACCGTTTAGTTATTACTCCGATCCAAGACCGAATAACTACTACGCCGATCCTCCGCCGATAAGATACTACTCAGATAATCCAGCGGATATTCTCCAGTTATGCGTGGGTAATCGATGTCTCATCATCCAGTTAGGTTACTGTGACCAAGTACCTAACAACCTCCGCAGTTTCTTAGCAGATCCAGAAACCACGTTCGTCGGTGTCTGGAATGGTCAAGATGCAGGAAAGCTTGCTCGGTGTTGCCACCAGTTGGAGATCGGAGAACTTCTGGACATAAGGCGGTACGTGACTGATTCGTGGGGAAGGAGCATGAGGCGTTCTTCGTTTGAAGAGATTGTTGAGGAATGTATGGGCTATCAAGGAGTGATGCTAGATCCGGAGATAAGCATGAGCGATTGGACCGCTTACGATCTAGACCTTGATCAGATTCTTCAGGCGTCACTAGATGCTTACGTTTGCCATCAGCTTGGTGTTTGGACTCGTCTCTGGGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

230

Amino Acids

26.48

Weight (kDa)

4.56

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	94 - 221	5e-06	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccIII	TCCGGA	1 cut(s)	571
AciI	CCGC	5 cut(s)	248, 278, 358, 475, 597
AclWI	GGATC	4 cut(s)	209, 236, 368, 563
AcuI	CTGAAG	1 cut(s)	611
AcyI	GRCGYC	2 cut(s)	183, 632
AfaI	GTAC	3 cut(s)	53, 345, 479
AfiI	CCNNNNNNNGG	2 cut(s)	96, 445
AgsI	TTSAA	2 cut(s)	142, 524
AluBI	AGCT	2 cut(s)	424, 661
AluI	AGCT	2 cut(s)	424, 661
Alw26I	GTCTC	3 cut(s)	66, 317, 683
AlwI	GGATC	4 cut(s)	209, 236, 368, 563
Aor13HI	TCCGGA	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	3 cut(s)	35, 79, 152
AvaII	GGWCC	1 cut(s)	594
BccI	CCATC	1 cut(s)	663
BceAI	ACGGC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	3 cut(s)	66, 317, 683
BfaI	CTAG	4 cut(s)	47, 566, 608, 638
BmcAI	AGTACT	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	594
BmsI	GCATC	3 cut(s)	403, 552, 631
BpmI	CTGGAG	1 cut(s)	272
Bsa29I	ATCGAT	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	481
BsaHI	GRCGYC	2 cut(s)	183, 632
BsaWI	WCCGGW	1 cut(s)	571
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 168, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 445
Bse1I	ACTGG	4 cut(s)	187, 289, 322, 442
BseAI	TCCGGA	1 cut(s)	571
BseCI	ATCGAT	1 cut(s)	307
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	96, 445
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	4 cut(s)	187, 289, 322, 442
BseRI	GAGGAG	1 cut(s)	145
BshVI	ATCGAT	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	572
BslI	CCNNNNNNNGG	2 cut(s)	96, 445
BsmAI	GTCTC	3 cut(s)	66, 317, 683
BsmBI	CGTCTC	2 cut(s)	66, 683
Bsp13I	TCCGGA	1 cut(s)	571
Bsp143I	GATC	7 cut(s)	214, 241, 373, 450, 568, 604, 616
BspACI	CCGC	5 cut(s)	248, 278, 358, 475, 597
BspCNI	CTCAG	1 cut(s)	278
BspDI	ATCGAT	1 cut(s)	307
BspEI	TCCGGA	1 cut(s)	571
BspPI	GGATC	4 cut(s)	209, 236, 368, 563
BsrI	ACTGG	4 cut(s)	187, 289, 322, 442
BssMI	GATC	7 cut(s)	214, 241, 373, 450, 568, 604, 616
BssNI	GRCGYC	2 cut(s)	183, 632
Bst4CI	ACNGT	5 cut(s)	25, 91, 149, 198, 335
Bst6I	CTCTTC	2 cut(s)	143, 519
BstACI	GRCGYC	2 cut(s)	183, 632
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	2 cut(s)	265, 367
BstF5I	GGATG	1 cut(s)	318
BstKTI	GATC	7 cut(s)	217, 244, 376, 453, 571, 607, 619
BstMAI	GTCTC	3 cut(s)	66, 317, 683
BstMBI	GATC	7 cut(s)	214, 241, 373, 450, 568, 604, 616
BstX2I	RGATCY	2 cut(s)	373, 568
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	2 cut(s)	373, 568
Bsu15I	ATCGAT	1 cut(s)	307
BsuTUI	ATCGAT	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	594
ClaI	ATCGAT	1 cut(s)	307
CseI	GACGC	2 cut(s)	172, 621
Csp6I	GTAC	3 cut(s)	52, 344, 478
CviAII	CATG	2 cut(s)	505, 583
CviJI	RGCY	5 cut(s)	5, 117, 424, 549, 661
CviKI_1	RGCY	5 cut(s)	5, 117, 424, 549, 661
CviQI	GTAC	3 cut(s)	52, 344, 478
DdeI	CTNAG	2 cut(s)	265, 367
DpnI	GATC	7 cut(s)	216, 243, 375, 452, 570, 606, 618
DpnII	GATC	7 cut(s)	214, 241, 373, 450, 568, 604, 616
Eam1104I	CTCTTC	2 cut(s)	143, 519
EarI	CTCTTC	2 cut(s)	143, 519
EciI	GGCGGA	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	611
Esp3I	CGTCTC	2 cut(s)	66, 683
FaeI	CATG	2 cut(s)	508, 586
FaiI	YATR	5 cut(s)	295, 470, 506, 545, 584
FatI	CATG	2 cut(s)	504, 582
FbaI	TGATCA	1 cut(s)	616
FokI	GGATG	1 cut(s)	305
FspBI	CTAG	4 cut(s)	47, 566, 608, 638
GsuI	CTGGAG	1 cut(s)	272
HapII	CCGG	1 cut(s)	572
HgaI	GACGC	2 cut(s)	172, 621
Hin1I	GRCGYC	2 cut(s)	183, 632
Hin1II	CATG	2 cut(s)	508, 586
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	5 cut(s)	101, 124, 488, 622, 673
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	3 cut(s)	35, 79, 152
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	4 cut(s)	214, 268, 455, 621
Hpy188III	TCNNGA	6 cut(s)	377, 400, 410, 464, 572, 608
Hpy8I	GTNNAC	1 cut(s)	192
Hpy99I	CGWCG	5 cut(s)	16, 29, 62, 173, 395
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	5 cut(s)	25, 91, 149, 198, 335
HpyCH4IV	ACGT	5 cut(s)	95, 132, 386, 480, 648
HpyCH4V	TGCA	1 cut(s)	416
HpyF3I	CTNAG	2 cut(s)	265, 367
HpySE526I	ACGT	5 cut(s)	95, 132, 386, 480, 648
Hsp92I	GRCGYC	2 cut(s)	183, 632
Hsp92II	CATG	2 cut(s)	508, 586
Kpn2I	TCCGGA	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	7 cut(s)	214, 241, 373, 450, 568, 604, 616
LmnI	GCTCC	1 cut(s)	501
LweI	GCATC	3 cut(s)	403, 552, 631
MaeI	CTAG	4 cut(s)	47, 566, 608, 638
MaeII	ACGT	5 cut(s)	95, 132, 386, 480, 648
MaeIII	GTNAC	7 cut(s)	32, 85, 91, 329, 335, 481, 633
MalI	GATC	7 cut(s)	216, 243, 375, 452, 570, 606, 618
MboI	GATC	7 cut(s)	214, 241, 373, 450, 568, 604, 616
MboII	GAAGA	5 cut(s)	96, 130, 507, 536, 617
MflI	RGATCY	2 cut(s)	373, 568
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	3 cut(s)	101, 154, 426
MnlI	CCTC	7 cut(s)	146, 166, 174, 255, 365, 501, 529
MroI	TCCGGA	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	572
NdeII	GATC	7 cut(s)	214, 241, 373, 450, 568, 604, 616
NlaIII	CATG	2 cut(s)	508, 586
NmuCI	GTSAC	4 cut(s)	85, 335, 481, 633
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	4 cut(s)	101, 124, 488, 622
PflMI	CCANNNNNTGG	1 cut(s)	445
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
Ppu21I	YACGTR	1 cut(s)	481
PspPI	GGNCC	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	373, 568
RsaI	GTAC	3 cut(s)	53, 345, 479
RsaNI	GTAC	3 cut(s)	52, 344, 478
Sau3AI	GATC	7 cut(s)	214, 241, 373, 450, 568, 604, 616
Sau96I	GGNCC	1 cut(s)	594
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	1 cut(s)	667
SfaNI	GCATC	3 cut(s)	403, 552, 631
SinI	GGWCC	1 cut(s)	594
SsiI	CCGC	5 cut(s)	248, 278, 358, 475, 597
SspMI	CTAG	4 cut(s)	47, 566, 608, 638
TaaI	ACNGT	5 cut(s)	25, 91, 149, 198, 335
TaiI	ACGT	5 cut(s)	98, 135, 389, 483, 651
TaqI	TCGA	2 cut(s)	60, 307
TaqII	GACCGA	1 cut(s)	238
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	4 cut(s)	101, 124, 488, 622
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	4 cut(s)	85, 335, 481, 633
Tsp45I	GTSAC	4 cut(s)	85, 335, 481, 633
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	2 cut(s)	46, 97
TspRI	CASTG	1 cut(s)	194
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	594
XbaI	TCTAGA	1 cut(s)	607
XspI	CTAG	4 cut(s)	47, 566, 608, 638
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.