Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Forward (+)

86104706 .. 86105395

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAAGTCGCAGTTCTTCAACTATGTGTGGGTCGCCATTGCCTTGTTTATCAATTGTCCCACTCCAAAAGCACTCCTCTATCGCTCATCGATCAAATTCCTCGGTGATGAAAACGTGACTTTCGTTGCTAAAGAAGTTAGAGAAGATGTGACTCGTTTGGCTCGTCAAGGATTACAAGTTAAATGTGCTATGGATGTCGCTCATATGGCTGCAAAGAAATACAAAGACAATAGCTACAAGTCCATGGGATTGAAGAAGTTGGCGATGGAGTTTCTGAACAAGGAGATGGAGAAGGATAAGAAAATTACAAGGAGTCTTTGGGGTAATGAACGACTCAATCGCCTTGAAGTGGAGTATGCTTGCATAGATGCTTTTGTTTCGTTTCAACTAGGAGTGCAATTACAAATTACCTACTCAAGTGAAGAGAGAATGAAATGCATCGCCGAGACAAAGAACTTTTGCATTAATGCATATTCATCAAGAAATTCCAACCGGAAGAAGTATCACATTATCAAAGAGGAAATAGCTGATATTGGCGATTATAGTAAGATTGTACCAACGGGTTGGTTCATCGAAGAAGAAGCGATTGATGTTGGGGATTACAGCAAGATTGTACCAACAGGTTGGTTCATCGAAGAGGAAGCAATTGATATTGGCGACTACAACGTTGTACCAACGTGCTGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

229

Amino Acids

26.47

Weight (kDa)

6.75

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	32 - 134	4.1e-09	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	666
AcsI	RAATTY	2 cut(s)	95, 484
AfaI	GTAC	3 cut(s)	555, 615, 672
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	4 cut(s)	19, 253, 347, 386
AluBI	AGCT	2 cut(s)	234, 527
AluI	AGCT	2 cut(s)	234, 527
Alw26I	GTCTC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	95, 484
AseI	ATTAAT	1 cut(s)	465
AsuHPI	GGTGA	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	259, 280
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	389
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmsI	GCATC	2 cut(s)	358, 447
BpuEI	CTTGAG	1 cut(s)	400
Bsa29I	ATCGAT	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	100, 243
BsaWI	WCCGGW	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	100, 243
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	681
BshVI	ATCGAT	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	493
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	90
Bsp19I	CCATGG	1 cut(s)	243
BspDI	ATCGAT	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	100, 243
BssMI	GATC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	417, 630
BstC8I	GCNNGC	1 cut(s)	361
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	196
BstXI	CCANNNNNNTGG	3 cut(s)	564, 624, 681
Bsu15I	ATCGAT	1 cut(s)	89
BsuTUI	ATCGAT	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	2 cut(s)	278, 424
BtsCI	GGATG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	361
ClaI	ATCGAT	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	554, 614, 671
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	4 cut(s)	161, 209, 234, 527
CviKI_1	RGCY	4 cut(s)	161, 209, 234, 527
CviQI	GTAC	3 cut(s)	554, 614, 671
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	417, 630
EarI	CTCTTC	2 cut(s)	417, 630
Eco130I	CCWWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	243
EcoT22I	ATGCAT	2 cut(s)	440, 472
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	247
FaiI	YATR	9 cut(s)	24, 191, 204, 206, 245, 357, 365, 472, 543
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	243
FauNDI	CATATG	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	685
HapII	CCGG	1 cut(s)	493
Hin1II	CATG	1 cut(s)	247
HinfI	GANTC	3 cut(s)	151, 313, 333
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	480
HpyAV	CCTTC	1 cut(s)	286
HpyCH4IV	ACGT	3 cut(s)	114, 666, 677
HpyCH4V	TGCA	6 cut(s)	212, 363, 397, 438, 462, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpySE526I	ACGT	3 cut(s)	114, 666, 677
Hsp92II	CATG	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	90
LpnPI	CCDG	3 cut(s)	506, 606, 667
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	358, 447
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	3 cut(s)	114, 666, 677
MaeIII	GTNAC	2 cut(s)	115, 148
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	8 cut(s)	7, 155, 265, 434, 508, 587, 590, 647
MfeI	CAATTG	2 cut(s)	52, 645
MluCI	AATT	7 cut(s)	52, 95, 303, 398, 405, 484, 645
MlyI	GAGTC	3 cut(s)	145, 322, 327
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	4 cut(s)	86, 110, 511, 631
Mph1103I	ATGCAT	2 cut(s)	440, 472
MseI	TTAA	3 cut(s)	180, 465, 688
MspI	CCGG	1 cut(s)	493
MunI	CAATTG	2 cut(s)	52, 645
MwoI	GCNNNNNNNGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	115, 148
NsiI	ATGCAT	2 cut(s)	440, 472
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 160
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	3 cut(s)	145, 321, 327
PpsI	GAGTC	3 cut(s)	145, 321, 327
PshBI	ATTAAT	1 cut(s)	465
Psp1406I	AACGTT	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	681
RsaI	GTAC	3 cut(s)	555, 615, 672
RsaNI	GTAC	3 cut(s)	554, 614, 671
SaqAI	TTAA	3 cut(s)	180, 465, 688
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	90
SchI	GAGTC	3 cut(s)	145, 322, 327
SetI	ASST	7 cut(s)	117, 236, 413, 529, 625, 669, 680
SfaNI	GCATC	2 cut(s)	358, 447
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	7 cut(s)	52, 95, 303, 398, 405, 484, 645
SspMI	CTAG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	3 cut(s)	117, 669, 680
TaqI	TCGA	3 cut(s)	89, 573, 633
TasI	AATT	7 cut(s)	52, 95, 303, 398, 405, 484, 645
Tru1I	TTAA	3 cut(s)	180, 465, 688
Tru9I	TTAA	3 cut(s)	180, 465, 688
TseFI	GTSAC	2 cut(s)	115, 148
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	115, 148
TspDTI	ATGAA	7 cut(s)	17, 123, 342, 446, 465, 559, 619
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	2 cut(s)	95, 484
XspI	CTAG	1 cut(s)	389
Zsp2I	ATGCAT	2 cut(s)	440, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.