Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

5974611 .. 5975246

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1053400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTATCAGTATCACAGACTACAAGTTGGACTACGATACGCACAGCCTATACAGAGTAGATTTCTTCGACGACTACATCACAACCCTTGTGACACACACTCCCTCCAAGGTCAAGTCCTGGATCAACAAAACCCGATACTTACACCGTTACCGACTTCACAAACTCATCATTGGACTTGATGTTGAGTGGCGTCCCAGTTTCAGTAACGGCGTGAACAACCCGGTCGCAACCCTACAATTGTGTGTTGGCCATCGCTGCCTTATATTTCAGTTGCTTCATACACCGGGGATCCCTAGTCGTCTTTTCAACTTTCTGGCAGATCCAGACTTTACCTTTGTCGGGGTTGGGATTAAGGACGATGTTCGAAAGCTTTACCTTGAGTATGGCCTCGCAGTAAGGAGGTTTGTCGATCTTAGGGAATTGGAAGCGAGAAGGTATGGCTGGAGTGTGCAGCGGAACATAGGGCTTAAGGACATGGCAGCGGATGTTCTGGGGCAAGAATTTGAAAAGCCAAAGACTATTACAATGAGTCACTGGGATAACCCGTCCCTTTCACTTGCGCAAATCAAGTATGCTTGCATCGATGCTTTTGTTTCTTTTGAAATTGGGAGGGCTTTACGCGCAGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

212

Amino Acids

24.43

Weight (kDa)

9.08

Isoelectric Point (pI)

26.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	49 - 208	9.6e-18	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	564
AccII	CGCG	1 cut(s)	624
AciI	CCGC	2 cut(s)	457, 485
AclWI	GGATC	4 cut(s)	131, 286, 299, 317
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	503
AcyI	GRCGYC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	3 cut(s)	310, 509, 605
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
AlwI	GGATC	4 cut(s)	131, 286, 299, 317
AoxI	GGCC	2 cut(s)	250, 388
ApeKI	GCWGC	4 cut(s)	258, 454, 482, 626
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspLEI	GCGC	2 cut(s)	565, 626
AsuC2I	CCSGG	2 cut(s)	224, 288
AsuII	TTCGAA	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	245, 466, 494
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	121
BcnI	CCSGG	2 cut(s)	224, 288
BfaI	CTAG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	470
BisI	GCNGC	4 cut(s)	259, 455, 483, 627
BlsI	GCNGC	4 cut(s)	260, 456, 484, 628
Bme1390I	CCNGG	3 cut(s)	121, 224, 288
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	3 cut(s)	121, 224, 288
BmrI	ACTGGG	2 cut(s)	192, 547
BmsI	GCATC	2 cut(s)	577, 591
BmuI	ACTGGG	2 cut(s)	192, 547
BpmI	CTGGAG	1 cut(s)	466
Bpu14I	TTCGAA	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	2 cut(s)	224, 288
Bsa29I	ATCGAT	1 cut(s)	585
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	108, 287
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 89, 115, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	198, 542
BseBI	CCWGG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	108, 287
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseNI	ACTGG	2 cut(s)	198, 542
BseXI	GCAGC	3 cut(s)	245, 466, 494
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	624
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	252, 390
BshVI	ATCGAT	1 cut(s)	585
BsiEI	CGRYCG	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	224, 287
BslFI	GGGAC	2 cut(s)	180, 535
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	180, 535
BsnI	GGCC	2 cut(s)	252, 390
Bsp119I	TTCGAA	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	123, 291, 322, 412
BspACI	CCGC	2 cut(s)	457, 485
BspANI	GGCC	2 cut(s)	252, 390
BspDI	ATCGAT	1 cut(s)	585
BspFNI	CGCG	1 cut(s)	624
BspLI	GGNNCC	1 cut(s)	293
BspPI	GGATC	4 cut(s)	131, 286, 299, 317
BspT104I	TTCGAA	1 cut(s)	367
BspTI	CTTAAG	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	198, 542
BssECI	CCNNGG	2 cut(s)	108, 287
BssMI	GATC	4 cut(s)	123, 291, 322, 412
BssNI	GRCGYC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	193
BstAFI	CTTAAG	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	624
BstHHI	GCGC	2 cut(s)	565, 626
BstKTI	GATC	4 cut(s)	126, 294, 325, 415
BstMBI	GATC	4 cut(s)	123, 291, 322, 412
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 623
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	3 cut(s)	119, 222, 286
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	3 cut(s)	245, 466, 494
BstX2I	RGATCY	2 cut(s)	291, 322
BstYI	RGATCY	2 cut(s)	291, 322
Bsu15I	ATCGAT	1 cut(s)	585
BsuRI	GGCC	2 cut(s)	252, 390
BsuTUI	ATCGAT	1 cut(s)	585
BtgZI	GCGATG	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	580
CfoI	GCGC	2 cut(s)	565, 626
ClaI	ATCGAT	1 cut(s)	585
CseI	GACGC	1 cut(s)	182
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	9 cut(s)	48, 252, 373, 390, 444, 469, 514, 617, 629
CviKI_1	RGCY	9 cut(s)	48, 252, 373, 390, 444, 469, 514, 617, 629
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	4 cut(s)	125, 293, 324, 414
DpnII	GATC	4 cut(s)	123, 291, 322, 412
EaeI	YGGCCR	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	481
FaiI	YATR	8 cut(s)	52, 266, 282, 387, 441, 464, 479, 576
FaqI	GGGAC	2 cut(s)	180, 535
FatI	CATG	1 cut(s)	477
Fnu4HI	GCNGC	4 cut(s)	259, 455, 483, 627
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	4 cut(s)	259, 455, 483, 627
FspBI	CTAG	1 cut(s)	297
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	2 cut(s)	564, 625
GluI	GCNGC	4 cut(s)	259, 455, 483, 627
GsuI	CTGGAG	1 cut(s)	466
HaeIII	GGCC	2 cut(s)	252, 390
HapII	CCGG	2 cut(s)	224, 287
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	565, 626
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	2 cut(s)	563, 624
HinP1I	GCGC	2 cut(s)	563, 624
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	1 cut(s)	532
HpaII	CCGG	2 cut(s)	224, 287
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	454, 582
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 623
HpyF3I	CTNAG	1 cut(s)	416
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	2 cut(s)	563, 624
Kzo9I	GATC	4 cut(s)	123, 291, 322, 412
Lsp1109I	GCAGC	3 cut(s)	245, 466, 494
LweI	GCATC	2 cut(s)	577, 591
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	4 cut(s)	91, 149, 206, 533
MalI	GATC	4 cut(s)	125, 293, 324, 414
MboI	GATC	4 cut(s)	123, 291, 322, 412
MboII	GAAGA	1 cut(s)	58
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	2 cut(s)	291, 322
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	4 cut(s)	239, 422, 503, 606
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	4 cut(s)	115, 396, 401, 606
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	2 cut(s)	354, 471
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	2 cut(s)	457, 485
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	2 cut(s)	224, 287
MspR9I	CCNGG	3 cut(s)	121, 224, 288
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	2 cut(s)	258, 623
NciI	CCSGG	2 cut(s)	224, 288
NdeII	GATC	4 cut(s)	123, 291, 322, 412
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	2 cut(s)	91, 533
NsbI	TGCGCA	1 cut(s)	564
NspV	TTCGAA	1 cut(s)	367
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	260, 456, 484, 628
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	291, 322
SaqAI	TTAA	2 cut(s)	354, 471
SatI	GCNGC	4 cut(s)	259, 455, 483, 627
Sau3AI	GATC	4 cut(s)	123, 291, 322, 412
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	3 cut(s)	121, 224, 288
SetI	ASST	6 cut(s)	114, 338, 375, 381, 407, 440
SfaNI	GCATC	2 cut(s)	577, 591
SfuI	TTCGAA	1 cut(s)	367
SmlI	CTYRAG	2 cut(s)	380, 470
SmoI	CTYRAG	2 cut(s)	380, 470
Sse9I	AATT	4 cut(s)	239, 422, 503, 606
SsiI	CCGC	2 cut(s)	457, 485
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	3 cut(s)	119, 222, 286
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	4 cut(s)	69, 367, 411, 585
TasI	AATT	4 cut(s)	239, 422, 503, 606
Tru1I	TTAA	2 cut(s)	354, 471
Tru9I	TTAA	2 cut(s)	354, 471
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	2 cut(s)	91, 533
TseI	GCWGC	4 cut(s)	258, 454, 482, 626
Tsp45I	GTSAC	2 cut(s)	91, 533
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	542
Vha464I	CTTAAG	1 cut(s)	470
XapI	RAATTY	1 cut(s)	503
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.