Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

65972822 .. 65973547

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00387270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCGGATTCGGATCACAAGTTGTATCATATTGAATTCTATGAAGACTGTATCACGACAACCGTAACCGGAAGCCCCCATATCGTCGATCAGTGGGTTAACGAAACTTATTACTTGCATGGCAGTGGCAGCCATGAGATGATGAACTTGTTTGTAGGGCTCGACACCGAATGGCGCTTCGACCCTGAAGCTCATGATTACCAAGTCGCAATCATTCAACTCTGTGACGTTCGTCGCCGTTGCCTCATCTTCCAGTTTTCTCAGCAAACCCAAACCGGCGAGATCATTAACAATGCTCCTCCTCATTCTCTCACCACTTTTCTGGCCGACCAAAACATCAGCTTTGTTGGCAAGCAAGTTAAGGAGGATGTTAAACGTTTGGCTCGTTTGGGATTGCATGTTTCACGTGCTGTGGATGTGTCTCATATGGCCGCCGAAAAGTACAGAGACAAAAGCCACAGATGCAAGGGACTTAAAACCTTGGCCATGGAGTTCCTGAACAAGGAGATGAACAAGCATAAGGATATCACGCTGAGCCGTTGGGACGTTGAGCAACTAAGTCTTGCCCAAGTCGAATATGCTTGCATTGATGCCTTCGTTTCGCTTCGACTCGGAATCCTACTCAGTACTACTAATGATCAGCTGGATCATCATCATCCCATCAATGACATAAAACAAAGCCAGCATGCTGCCCTGTCTAGCGAGGTCAACCATGCCTCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

241

Amino Acids

27.67

Weight (kDa)

5.94

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	51 - 204	1.5e-16	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 432
AclI	AACGTT	1 cut(s)	376
AclWI	GGATC	2 cut(s)	21, 654
AcoI	YGGCCR	3 cut(s)	324, 429, 483
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	207
AcvI	CACGTG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	443, 628
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	2 cut(s)	35, 218
AluBI	AGCT	3 cut(s)	191, 342, 643
AluI	AGCT	3 cut(s)	191, 342, 643
Alw26I	GTCTC	2 cut(s)	426, 441
AlwI	GGATC	2 cut(s)	21, 654
AoxI	GGCC	3 cut(s)	324, 429, 483
ApeKI	GCWGC	2 cut(s)	129, 689
ApoI	RAATTY	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	162
BbrPI	CACGTG	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	141, 676
BccI	CCATC	1 cut(s)	668
BceAI	ACGGC	2 cut(s)	222, 522
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	426, 441
BfaI	CTAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	3 cut(s)	130, 432, 690
BlpI	GCTNAGC	1 cut(s)	533
BlsI	GCNGC	3 cut(s)	131, 433, 691
BmcAI	AGTACT	1 cut(s)	628
BmsI	GCATC	2 cut(s)	452, 580
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	407
BsaBI	GATNNNNATC	2 cut(s)	12, 651
BsaJI	CCNNGG	2 cut(s)	480, 486
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	253
Bse8I	GATNNNNATC	2 cut(s)	12, 651
BseDI	CCNNGG	2 cut(s)	480, 486
BseGI	GGATG	3 cut(s)	373, 421, 655
BseJI	GATNNNNATC	2 cut(s)	12, 651
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	275, 524, 637
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	288, 291
BseXI	GCAGC	2 cut(s)	141, 676
BshFI	GGCC	3 cut(s)	326, 431, 485
BsiSI	CCGG	2 cut(s)	69, 276
BslFI	GGGAC	2 cut(s)	483, 557
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	2 cut(s)	426, 441
BsmFI	GGGAC	2 cut(s)	483, 557
BsnI	GGCC	3 cut(s)	326, 431, 485
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	5 cut(s)	13, 88, 282, 637, 646
Bsp1720I	GCTNAGC	1 cut(s)	533
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	2 cut(s)	5, 432
BspANI	GGCC	3 cut(s)	326, 431, 485
BspCNI	CTCAG	3 cut(s)	274, 525, 636
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	2 cut(s)	21, 654
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	480, 486
BssMI	GATC	5 cut(s)	13, 88, 282, 637, 646
BssT1I	CCWWGG	2 cut(s)	480, 486
Bst4CI	ACNGT	2 cut(s)	50, 64
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	4 cut(s)	353, 583, 683, 687
BstDEI	CTNAG	4 cut(s)	261, 533, 557, 623
BstDSI	CCRYGG	1 cut(s)	486
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	3 cut(s)	373, 421, 655
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	5 cut(s)	16, 91, 285, 640, 649
BstMAI	GTCTC	2 cut(s)	426, 441
BstMBI	GATC	5 cut(s)	13, 88, 282, 637, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 348, 462
BstNSI	RCATGY	2 cut(s)	401, 689
BstPAI	GACNNNNGTC	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	141, 676
BstV2I	GAAGAC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	326, 431, 485
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	3 cut(s)	373, 421, 655
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	98, 130
Cac8I	GCNNGC	4 cut(s)	353, 583, 683, 687
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	442, 627
CviAII	CATG	7 cut(s)	119, 134, 194, 398, 487, 686, 713
CviQI	GTAC	2 cut(s)	442, 627
DdeI	CTNAG	4 cut(s)	261, 533, 557, 623
DpnI	GATC	5 cut(s)	15, 90, 284, 639, 648
DpnII	GATC	5 cut(s)	13, 88, 282, 637, 646
EaeI	YGGCCR	3 cut(s)	324, 429, 483
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	480, 486
Eco24I	GRGCYC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	207
Eco72I	CACGTG	1 cut(s)	407
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	480, 486
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	2 cut(s)	480, 486
FaeI	CATG	7 cut(s)	122, 137, 197, 401, 490, 689, 716
FaqI	GGGAC	2 cut(s)	483, 557
FatI	CATG	7 cut(s)	118, 133, 193, 397, 486, 685, 712
FauNDI	CATATG	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	3 cut(s)	130, 432, 690
FokI	GGATG	3 cut(s)	380, 428, 642
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	130, 432, 690
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	3 cut(s)	130, 432, 690
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	326, 431, 485
HapII	CCGG	2 cut(s)	69, 276
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	7 cut(s)	122, 137, 197, 401, 490, 689, 716
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	2 cut(s)	100, 709
HindII	GTYRAC	2 cut(s)	100, 709
HinfI	GANTC	3 cut(s)	8, 609, 615
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	69, 276
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	2 cut(s)	100, 709
Hpy188I	TCNGA	2 cut(s)	13, 614
Hpy188III	TCNNGA	3 cut(s)	55, 194, 496
Hpy8I	GTNNAC	2 cut(s)	100, 709
Hpy99I	CGWCG	2 cut(s)	89, 237
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	2 cut(s)	50, 64
HpyCH4IV	ACGT	4 cut(s)	228, 376, 406, 546
HpyCH4V	TGCA	4 cut(s)	118, 397, 465, 585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 348, 462
HpyF3I	CTNAG	4 cut(s)	261, 533, 557, 623
HpySE526I	ACGT	4 cut(s)	228, 376, 406, 546
Hsp92II	CATG	7 cut(s)	122, 137, 197, 401, 490, 689, 716
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	637
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	13, 88, 282, 637, 646
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	9 cut(s)	82, 198, 266, 289, 308, 509, 629, 695, 707
Lsp1109I	GCAGC	2 cut(s)	141, 676
LweI	GCATC	2 cut(s)	452, 580
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	4 cut(s)	228, 376, 406, 546
MaeIII	GTNAC	2 cut(s)	64, 224
MalI	GATC	5 cut(s)	15, 90, 284, 639, 648
MboI	GATC	5 cut(s)	13, 88, 282, 637, 646
MboII	GAAGA	2 cut(s)	56, 241
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	485
MlyI	GAGTC	1 cut(s)	603
MnlI	CCTC	5 cut(s)	254, 309, 312, 358, 697
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	5 cut(s)	99, 288, 360, 372, 474
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	643
MspI	CCGG	2 cut(s)	69, 276
MwoI	GCNNNNNNNGC	3 cut(s)	129, 348, 462
NcoI	CCATGG	1 cut(s)	486
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	5 cut(s)	13, 88, 282, 637, 646
NlaIII	CATG	7 cut(s)	122, 137, 197, 401, 490, 689, 716
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	2 cut(s)	401, 689
PaeI	GCATGC	1 cut(s)	689
PagI	TCATGA	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	8, 615
PkrI	GCNGC	3 cut(s)	131, 433, 691
PleI	GAGTC	1 cut(s)	603
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	603
Ppu21I	YACGTR	1 cut(s)	407
PshAI	GACNNNNGTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	376
PspCI	CACGTG	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	643
RsaI	GTAC	2 cut(s)	443, 628
RsaNI	GTAC	2 cut(s)	442, 627
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	5 cut(s)	99, 288, 360, 372, 474
SatI	GCNGC	3 cut(s)	130, 432, 690
Sau3AI	GATC	5 cut(s)	13, 88, 282, 637, 646
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	9 cut(s)	193, 231, 344, 379, 409, 482, 549, 645, 708
SfaNI	GCATC	2 cut(s)	452, 580
SmiMI	CAYNNNNRTG	1 cut(s)	123
SphI	GCATGC	1 cut(s)	689
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	2 cut(s)	5, 432
SspMI	CTAG	1 cut(s)	699
StyI	CCWWGG	2 cut(s)	480, 486
TaaI	ACNGT	2 cut(s)	50, 64
TaiI	ACGT	4 cut(s)	231, 379, 409, 549
TaqI	TCGA	5 cut(s)	87, 162, 180, 573, 607
TasI	AATT	1 cut(s)	35
TatI	WGTACW	2 cut(s)	441, 626
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	8, 615
Tru1I	TTAA	5 cut(s)	99, 288, 360, 372, 474
Tru9I	TTAA	5 cut(s)	99, 288, 360, 372, 474
TscAI	CASTG	2 cut(s)	98, 130
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	2 cut(s)	129, 689
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	57, 158, 524
TspRI	CASTG	2 cut(s)	98, 130
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	2 cut(s)	401, 689
XspI	CTAG	1 cut(s)	699
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.