Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

3955961 .. 3956827

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTCCGACGATCAAAAGAATCAGAAGTTTCCGTACTCACCAAAAACACTTTGTCGATTTTTTCGGAGACGACTTGATCGTCACCGTTACGCCGACTGCTTCCGTTATCCGCCGCTGGATTCGTAGCGTCCGCTCCTACAACCGTAATCACTCGGTACATCCTCTCGTCGTTGGAATCGGTGTTCAGTGGAGACCGGATAGTTCCGATCCAGATCCACCACCAAAAACTCTCCAGTTGTGCGTCGGTAGTCGCTGTCTCATCATCCAACTAGGTTACAATTACGGTCTCCCAAAAGTCCTCCGCACTTTCCTTGCCGATCCCAAAACGACTTTCGTCGGCGTTTGGAACGGCCAAGACCAGAAAAAACTCGAGAAATGTAGGCATCGAGTGGAGATCGGGAAGCTTCTGGACATAAGGATGTTCGTGAGAGATTCGAGAGGGGCTAGGATGTGTTTTTGTTCGTTTGAACAGATCGTGAAGGAGCGTTTGGGTCGCGTAGGAGTGAGGTTAGATCCGGCGATTTGTATGAGCGATTGGGGCGTTTATAACCTTAACCATTATCAGGTACTTCAGGCGTCGATTGAGTCGTATGTTTGCTTTAAGCTCGCTGTTGAGGAACGTCTCTGGAACTTAAAAGTTGCTGCTAATCTTGTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

220

Amino Acids

25.36

Weight (kDa)

9.79

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AasI	GACNNNNNNGTC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	1 cut(s)	498
AciI	CCGC	4 cut(s)	112, 115, 133, 304
AclWI	GGATC	4 cut(s)	203, 209, 314, 509
AcoI	YGGCCR	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	557
AcyI	GRCGYC	1 cut(s)	578
AfaI	GTAC	3 cut(s)	37, 159, 570
AfiI	CCNNNNNNNGG	1 cut(s)	565
AgsI	TTSAA	1 cut(s)	470
AjuI	GAANNNNNNNTTGG	4 cut(s)	317, 349, 473, 505
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	2 cut(s)	406, 607
AluI	AGCT	2 cut(s)	406, 607
Alw26I	GTCTC	5 cut(s)	63, 187, 263, 293, 629
AlwI	GGATC	4 cut(s)	203, 209, 314, 509
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	644
AsuHPI	GGTGA	2 cut(s)	32, 76
AvaI	CYCGRG	1 cut(s)	371
BarI	GAAGNNNNNNTAC	2 cut(s)	19, 51
BbvI	GCAGC	1 cut(s)	631
BceAI	ACGGC	1 cut(s)	367
BcoDI	GTCTC	5 cut(s)	63, 187, 263, 293, 629
BfaI	CTAG	2 cut(s)	272, 447
BisI	GCNGC	2 cut(s)	115, 645
BlsI	GCNGC	2 cut(s)	116, 646
BmeT110I	CYCGRG	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	394
BoxI	GACNNNNGTC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	578
BsaI	GGTCTC	2 cut(s)	187, 293
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse1I	ACTGG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	213
BseGI	GGATG	4 cut(s)	160, 264, 426, 456
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseNI	ACTGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	631
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	197, 518
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmAI	GTCTC	5 cut(s)	63, 187, 263, 293, 629
BsmBI	CGTCTC	2 cut(s)	63, 629
BsnI	GGCC	1 cut(s)	354
Bso31I	GGTCTC	2 cut(s)	187, 293
BsoBI	CYCGRG	1 cut(s)	371
Bsp143I	GATC	8 cut(s)	12, 78, 208, 214, 319, 396, 474, 514
BspACI	CCGC	4 cut(s)	112, 115, 133, 304
BspANI	GGCC	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	4 cut(s)	203, 209, 314, 509
BspTNI	GGTCTC	2 cut(s)	187, 293
BsrBI	CCGCTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	235
BssMI	GATC	8 cut(s)	12, 78, 208, 214, 319, 396, 474, 514
BssNI	GRCGYC	1 cut(s)	578
Bst4CI	ACNGT	3 cut(s)	88, 146, 287
BstACI	GRCGYC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	609
BstF5I	GGATG	4 cut(s)	160, 264, 426, 456
BstFNI	CGCG	1 cut(s)	498
BstKTI	GATC	8 cut(s)	15, 81, 211, 217, 322, 399, 477, 517
BstMAI	GTCTC	5 cut(s)	63, 187, 263, 293, 629
BstMBI	GATC	8 cut(s)	12, 78, 208, 214, 319, 396, 474, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstPAI	GACNNNNGTC	1 cut(s)	335
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	631
BstX2I	RGATCY	2 cut(s)	214, 514
BstYI	RGATCY	2 cut(s)	214, 514
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	4 cut(s)	160, 264, 426, 456
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	609
CseI	GACGC	3 cut(s)	118, 232, 567
Csp6I	GTAC	3 cut(s)	36, 158, 569
CviJI	RGCY	5 cut(s)	5, 354, 406, 446, 607
CviKI_1	RGCY	5 cut(s)	5, 354, 406, 446, 607
CviQI	GTAC	3 cut(s)	36, 158, 569
DpnI	GATC	8 cut(s)	14, 80, 210, 216, 321, 398, 476, 516
DpnII	GATC	8 cut(s)	12, 78, 208, 214, 319, 396, 474, 514
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	101
Eco31I	GGTCTC	2 cut(s)	187, 293
Eco57I	CTGAAG	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	371
Esp3I	CGTCTC	2 cut(s)	63, 629
FaiI	YATR	4 cut(s)	416, 530, 549, 594
Fnu4HI	GCNGC	2 cut(s)	115, 645
FokI	GGATG	4 cut(s)	147, 251, 433, 463
Fsp4HI	GCNGC	2 cut(s)	115, 645
FspBI	CTAG	2 cut(s)	272, 447
GluI	GCNGC	2 cut(s)	115, 645
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	2 cut(s)	197, 518
HgaI	GACGC	3 cut(s)	118, 232, 567
Hin1I	GRCGYC	1 cut(s)	578
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	5 cut(s)	21, 121, 177, 434, 587
HpaII	CCGG	2 cut(s)	197, 518
HphI	GGTGA	2 cut(s)	32, 76
Hpy188I	TCNGA	4 cut(s)	9, 26, 68, 208
Hpy188III	TCNNGA	8 cut(s)	212, 373, 400, 410, 427, 438, 478, 628
Hpy99I	CGWCG	5 cut(s)	13, 173, 248, 341, 583
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	3 cut(s)	88, 146, 287
HpyCH4IV	ACGT	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	622
Hsp92I	GRCGYC	1 cut(s)	578
Kzo9I	GATC	8 cut(s)	12, 78, 208, 214, 319, 396, 474, 514
LmnI	GCTCC	3 cut(s)	10, 140, 484
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	272, 447
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	3 cut(s)	82, 88, 275
MalI	GATC	8 cut(s)	14, 80, 210, 216, 321, 398, 476, 516
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	8 cut(s)	12, 78, 208, 214, 319, 396, 474, 514
MflI	RGATCY	2 cut(s)	214, 514
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	3 cut(s)	32, 154, 292
MnlI	CCTC	5 cut(s)	174, 311, 434, 501, 610
MseI	TTAA	3 cut(s)	555, 603, 635
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	2 cut(s)	197, 518
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	540
NdeII	GATC	8 cut(s)	12, 78, 208, 214, 319, 396, 474, 514
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 587
PfeI	GAWTC	4 cut(s)	21, 121, 177, 434
PkrI	GCNGC	2 cut(s)	116, 646
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PshAI	GACNNNNGTC	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	214, 514
RsaI	GTAC	3 cut(s)	37, 159, 570
RsaNI	GTAC	3 cut(s)	36, 158, 569
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	3 cut(s)	555, 603, 635
SatI	GCNGC	2 cut(s)	115, 645
Sau3AI	GATC	8 cut(s)	12, 78, 208, 214, 319, 396, 474, 514
SchI	GAGTC	1 cut(s)	596
SetI	ASST	7 cut(s)	277, 408, 512, 555, 570, 609, 625
SfaNI	GCATC	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	4 cut(s)	112, 115, 133, 304
SspMI	CTAG	2 cut(s)	272, 447
TaaI	ACNGT	3 cut(s)	88, 146, 287
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	5 cut(s)	57, 372, 388, 437, 581
TasI	AATT	1 cut(s)	280
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	4 cut(s)	21, 121, 177, 434
Tru1I	TTAA	3 cut(s)	555, 603, 635
Tru9I	TTAA	3 cut(s)	555, 603, 635
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	644
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	2 cut(s)	23, 94
TspRI	CASTG	1 cut(s)	194
XhoI	CTCGAG	1 cut(s)	371
XspI	CTAG	2 cut(s)	272, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.