Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

2843536 .. 2844147

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G019000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCCGTCAGCATAGTAGACTATGAACTGCCACACGACACCCACAATGTGTACGACGTGTCGTTTCACGGCGATCGGATCCACACTCTGGTCACTCACAGCTCGTCCGTGGTGGATTCATGGCTCGCCCAAACCAACCTCCAGTCCCGAATCGTAGGGCTTGACGTGGAGTGGCGCCCCAACTTCAACCGTTCGATCGAAAACCCAGTGGCCACGCTGCAGCTCTGCGTGGGCCCCGATTGCCTGATCTACCAGCTCCTCCACACCGATCACATTCCCCAGGCCCTCCACGCCTTCCTCGCTAATCGCAGCTACACATTCGTCGGCGTAGGCATCGGCAGCGACGTGGAGAAGCTCCTCCTTGACTACGGGCTGCACGTGGCCAATGCGGTTGATCTTGCGGTTTTCGCAGCGGGTAGATTTGATTCGACGGAGCTGAGGAATGCTGGGTTGAAGGGATTGGCCAGGCGGATGCTGGGGAAGGAGGTTCAGAAGCCCAATAGGATCACCATGAGCAGATGGGACAATCAGTGGCTTACTTGTGACCAGGTTCAGTATGCTTGTGTTGATGCTTTTCTTTCCTTTGAGATTGCTAGGCATTTGAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

204

Amino Acids

22.83

Weight (kDa)

5.88

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	4 cut(s)	389, 401, 413, 469
AclWI	GGATC	3 cut(s)	73, 86, 512
AcoI	YGGCCR	4 cut(s)	3, 210, 381, 462
AcvI	CACGTG	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	175
AdeI	CACNNNGTG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	187, 454, 604
AjiI	CACGTC	3 cut(s)	58, 166, 346
AjnI	CCWGG	3 cut(s)	279, 464, 546
AluBI	AGCT	6 cut(s)	102, 223, 256, 312, 355, 436
AluI	AGCT	6 cut(s)	102, 223, 256, 312, 355, 436
AlwI	GGATC	3 cut(s)	73, 86, 512
AoxI	GGCC	6 cut(s)	3, 210, 232, 282, 381, 462
ApaI	GGGCCC	1 cut(s)	236
ApeKI	GCWGC	6 cut(s)	217, 220, 309, 339, 373, 410
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	3 cut(s)	232, 233, 283
AsuHPI	GGTGA	1 cut(s)	499
BaeGI	GKGCMC	1 cut(s)	236
BalI	TGGCCA	3 cut(s)	212, 383, 464
BamHI	GGATCC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	236
BbrPI	CACGTG	1 cut(s)	379
BbvCI	CCTCAGC	1 cut(s)	437
BbvI	GCAGC	6 cut(s)	204, 232, 321, 351, 360, 422
BccI	CCATC	1 cut(s)	513
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	3 cut(s)	281, 466, 548
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	6 cut(s)	218, 221, 310, 340, 374, 411
BlsI	GCNGC	6 cut(s)	219, 222, 311, 341, 375, 412
Bme1390I	CCNGG	3 cut(s)	281, 466, 548
BmgBI	CACGTC	3 cut(s)	58, 166, 346
BmgT120I	GGNCC	3 cut(s)	232, 233, 283
BmiI	GGNNCC	4 cut(s)	80, 176, 234, 235
BmrFI	CCNGG	3 cut(s)	281, 466, 548
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	342, 462, 559
BmuI	ACTGGG	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	437
BsaAI	YACGTR	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	108, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	2 cut(s)	142, 206
BseBI	CCWGG	3 cut(s)	281, 466, 548
BseDI	CCNNGG	2 cut(s)	108, 279
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	2 cut(s)	142, 206
BseRI	GAGGAG	2 cut(s)	248, 347
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	6 cut(s)	204, 232, 321, 351, 360, 422
BseYI	CCCAGC	2 cut(s)	446, 475
BsgI	GTGCAG	1 cut(s)	359
Bsh1285I	CGRYCG	2 cut(s)	76, 198
BshFI	GGCC	6 cut(s)	5, 212, 234, 284, 383, 464
BshNI	GGYRCC	1 cut(s)	174
BsiEI	CGRYCG	2 cut(s)	76, 198
BslFI	GGGAC	2 cut(s)	130, 536
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	130, 536
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	6 cut(s)	5, 212, 234, 284, 383, 464
Bsp120I	GGGCCC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	7 cut(s)	73, 78, 195, 246, 268, 394, 504
BspACI	CCGC	4 cut(s)	389, 401, 413, 469
BspANI	GGCC	6 cut(s)	5, 212, 234, 284, 383, 464
BspCNI	CTCAG	1 cut(s)	429
BspLI	GGNNCC	4 cut(s)	80, 176, 234, 235
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	3 cut(s)	73, 86, 512
BspT107I	GGYRCC	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	142, 206
BssECI	CCNNGG	2 cut(s)	108, 279
BssMI	GATC	7 cut(s)	73, 78, 195, 246, 268, 394, 504
BssNI	GRCGYC	1 cut(s)	175
Bst2UI	CCWGG	3 cut(s)	281, 466, 548
Bst4CI	ACNGT	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	437
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	477
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	7 cut(s)	76, 81, 198, 249, 271, 397, 507
BstMBI	GATC	7 cut(s)	73, 78, 195, 246, 268, 394, 504
BstMCI	CGRYCG	2 cut(s)	76, 198
BstMWI	GCNNNNNNNGC	5 cut(s)	240, 290, 299, 339, 407
BstNI	CCWGG	3 cut(s)	281, 466, 548
BstSCI	CCNGG	3 cut(s)	279, 464, 546
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	6 cut(s)	204, 232, 321, 351, 360, 422
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	6 cut(s)	5, 212, 234, 284, 383, 464
BtgI	CCRYGG	1 cut(s)	108
BtrI	CACGTC	3 cut(s)	58, 166, 346
BtsCI	GGATG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	213, 536
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	232, 233, 283
CsiI	ACCWGGT	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	2 cut(s)	120, 511
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	437
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	7 cut(s)	75, 80, 197, 248, 270, 396, 506
DpnII	GATC	7 cut(s)	73, 78, 195, 246, 268, 394, 504
DraIII	CACNNNGTG	1 cut(s)	49
EaeI	YGGCCR	4 cut(s)	3, 210, 381, 462
EciI	GGCGGA	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	236
Eco72I	CACGTG	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	233, 283
EcoRII	CCWGG	3 cut(s)	279, 464, 546
EcoT38I	GRGCYC	1 cut(s)	236
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
FaeI	CATG	2 cut(s)	123, 514
FaiI	YATR	5 cut(s)	14, 24, 121, 512, 558
FaqI	GGGAC	2 cut(s)	130, 536
FatI	CATG	2 cut(s)	119, 510
FauI	CCCGC	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	218, 221, 310, 340, 374, 411
FokI	GGATG	1 cut(s)	484
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	6 cut(s)	218, 221, 310, 340, 374, 411
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	6 cut(s)	218, 221, 310, 340, 374, 411
GsaI	CCCAGC	2 cut(s)	450, 479
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	6 cut(s)	5, 212, 234, 284, 383, 464
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	123, 514
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	116, 150, 425
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	19, 52
Hpy188I	TCNGA	2 cut(s)	78, 492
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	2 cut(s)	19, 52
Hpy99I	CGWCG	4 cut(s)	59, 326, 347, 433
HpyAV	CCTTC	3 cut(s)	304, 448, 475
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	4 cut(s)	57, 165, 345, 378
HpyCH4V	TGCA	2 cut(s)	220, 376
HpyF10VI	GCNNNNNNNGC	5 cut(s)	240, 290, 299, 339, 407
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	4 cut(s)	57, 165, 345, 378
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	123, 514
HspAI	GCGC	1 cut(s)	175
KasI	GGCGCC	1 cut(s)	174
Kzo9I	GATC	7 cut(s)	73, 78, 195, 246, 268, 394, 504
LmnI	GCTCC	3 cut(s)	261, 360, 433
Lsp1109I	GCAGC	6 cut(s)	204, 232, 321, 351, 360, 422
LweI	GCATC	3 cut(s)	342, 462, 559
MabI	ACCWGGT	1 cut(s)	546
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	4 cut(s)	57, 165, 345, 378
MaeIII	GTNAC	2 cut(s)	91, 542
MalI	GATC	7 cut(s)	75, 80, 197, 248, 270, 396, 506
MboI	GATC	7 cut(s)	73, 78, 195, 246, 268, 394, 504
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	236
MlsI	TGGCCA	3 cut(s)	212, 383, 464
MluNI	TGGCCA	3 cut(s)	212, 383, 464
Mly113I	GGCGCC	1 cut(s)	175
MnlI	CCTC	7 cut(s)	149, 269, 296, 308, 368, 432, 478
Mox20I	TGGCCA	3 cut(s)	212, 383, 464
MscI	TGGCCA	3 cut(s)	212, 383, 464
MslI	CAYNNNNRTG	1 cut(s)	603
Msp20I	TGGCCA	3 cut(s)	212, 383, 464
MspA1I	CMGCKG	1 cut(s)	413
MspR9I	CCNGG	3 cut(s)	281, 466, 548
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	3 cut(s)	281, 466, 548
MwoI	GCNNNNNNNGC	5 cut(s)	240, 290, 299, 339, 407
NarI	GGCGCC	1 cut(s)	175
NdeII	GATC	7 cut(s)	73, 78, 195, 246, 268, 394, 504
NlaIII	CATG	2 cut(s)	123, 514
NlaIV	GGNNCC	4 cut(s)	80, 176, 234, 235
NmuCI	GTSAC	2 cut(s)	91, 542
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 375
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	3 cut(s)	116, 150, 425
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	6 cut(s)	219, 222, 311, 341, 375, 412
Ple19I	CGATCG	2 cut(s)	76, 198
PluTI	GGCGCC	1 cut(s)	178
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	379
Psp6I	CCWGG	3 cut(s)	279, 464, 546
PspCI	CACGTG	1 cut(s)	379
PspFI	CCCAGC	2 cut(s)	446, 475
PspGI	CCWGG	3 cut(s)	279, 464, 546
PspN4I	GGNNCC	4 cut(s)	80, 176, 234, 235
PspOMI	GGGCCC	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	232, 233, 283
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	78
PvuI	CGATCG	2 cut(s)	76, 198
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	603
SatI	GCNGC	6 cut(s)	218, 221, 310, 340, 374, 411
Sau3AI	GATC	7 cut(s)	73, 78, 195, 246, 268, 394, 504
Sau96I	GGNCC	3 cut(s)	232, 233, 283
ScrFI	CCNGG	3 cut(s)	281, 466, 548
SduI	GDGCHC	1 cut(s)	236
SexAI	ACCWGGT	1 cut(s)	546
SfaNI	GCATC	3 cut(s)	342, 462, 559
SfcI	CTRYAG	1 cut(s)	218
SfoI	GGCGCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	603
SsiI	CCGC	4 cut(s)	389, 401, 413, 469
SspDI	GGCGCC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	3 cut(s)	279, 464, 546
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	4 cut(s)	60, 168, 348, 381
TaqI	TCGA	3 cut(s)	194, 198, 428
TfiI	GAWTC	3 cut(s)	116, 150, 425
TscAI	CASTG	2 cut(s)	213, 536
TseFI	GTSAC	2 cut(s)	91, 542
TseI	GCWGC	6 cut(s)	217, 220, 309, 339, 373, 410
Tsp45I	GTSAC	2 cut(s)	91, 542
TspDTI	ATGAA	2 cut(s)	39, 108
TspGWI	ACGGA	2 cut(s)	97, 446
TspRI	CASTG	2 cut(s)	213, 536
Van91I	CCANNNNNTGG	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.