Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

54744676 .. 54745519

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0376400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCATCAATTCTCATGCTTCTGGAAACCGGAATGCTCCTCACAATTTGAGGGTTGACCCATCAGTTATGAGCTCTTCATCTTCATTGACAAGGCTCACCAAGAGGTCATCCATGAATGTTAGAAAAATCAAAGGTAAAATTCTGCAGAACTTCCTGAATAATGGAATCCCCCACACTTTGCCTTCTAACAAGACCACAGTGTACCAGCTGAATAAGCTTAATCCACAAAATTACAAGAATCAGTTAGTCTACTGCAAGGCTTCCATTTGCACATTCTCAGCACATGAAGGCTGGTGGTATGAGGCATGTCCAGAGTGCTACAAACAACTAACAGTGAAGAAAAATAGTGATCTACGAATCTGTCAAGACCATAGTATGCAAATACCTCTTCCATGTTATAGACTTCATGTCACCATTGAAGATCCAAACAGTGAAGCCACATTAAAGCTTAGAGGAAAACCAGCTAAACAGTTATTCGGAATAACTTGCAAAGAACTCTTAGACAAATGCCCCTATGTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

175

Amino Acids

19.86

Weight (kDa)

9.53

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep_fac-A_C	PF08646	86 - 168	2.5e-06	Replication factor-A C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	141
AfaI	GTAC	2 cut(s)	206, 522
AgsI	TTSAA	1 cut(s)	422
AhdI	GACNNNNNGTC	1 cut(s)	410
AluBI	AGCT	5 cut(s)	75, 211, 220, 451, 467
AluI	AGCT	5 cut(s)	75, 211, 220, 451, 467
Alw21I	GWGCWC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	419
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	91, 406
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BccI	CCATC	2 cut(s)	14, 70
BfmI	CTRYAG	1 cut(s)	146
BmeRI	GACNNNNNGTC	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	30
BseGI	GGATG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	352, 424
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	293
BspMAI	CTGCAG	1 cut(s)	150
BspPI	GGATC	1 cut(s)	419
BspQI	GCTCTTC	1 cut(s)	82
BssMI	GATC	2 cut(s)	352, 424
Bst4CI	ACNGT	4 cut(s)	202, 337, 434, 474
Bst6I	CTCTTC	2 cut(s)	82, 396
BstDEI	CTNAG	3 cut(s)	280, 452, 502
BstF5I	GGATG	1 cut(s)	110
BstKTI	GATC	2 cut(s)	355, 427
BstMBI	GATC	2 cut(s)	352, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	3 cut(s)	207, 342, 439
Csp6I	GTAC	2 cut(s)	205, 521
CviAII	CATG	6 cut(s)	17, 115, 287, 309, 396, 410
CviQI	GTAC	2 cut(s)	205, 521
DdeI	CTNAG	3 cut(s)	280, 452, 502
DpnI	GATC	2 cut(s)	354, 426
DpnII	GATC	2 cut(s)	352, 424
DriI	GACNNNNNGTC	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	82, 396
Eam1105I	GACNNNNNGTC	1 cut(s)	410
EarI	CTCTTC	2 cut(s)	82, 396
Ecl136II	GAGCTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	77
FaeI	CATG	6 cut(s)	20, 118, 290, 312, 399, 413
FatI	CATG	6 cut(s)	16, 114, 286, 308, 395, 409
FblI	GTMKAC	1 cut(s)	252
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	31
Hin1II	CATG	6 cut(s)	20, 118, 290, 312, 399, 413
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	2 cut(s)	218, 449
HinfI	GANTC	3 cut(s)	168, 241, 360
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	2 cut(s)	91, 406
Hpy166II	GTNNAC	3 cut(s)	58, 205, 253
Hpy188I	TCNGA	1 cut(s)	482
Hpy188III	TCNNGA	4 cut(s)	24, 157, 314, 368
Hpy8I	GTNNAC	3 cut(s)	58, 205, 253
HpyAV	CCTTC	2 cut(s)	195, 284
HpyCH4III	ACNGT	4 cut(s)	202, 337, 434, 474
HpyCH4V	TGCA	5 cut(s)	148, 258, 273, 382, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	3 cut(s)	280, 452, 502
Hsp92II	CATG	6 cut(s)	20, 118, 290, 312, 399, 413
Kzo9I	GATC	2 cut(s)	352, 424
LguI	GCTCTTC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	7 cut(s)	9, 44, 170, 221, 280, 327, 477
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	2 cut(s)	354, 426
MboI	GATC	2 cut(s)	352, 424
MboII	GAAGA	5 cut(s)	69, 75, 352, 383, 434
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	10, 46, 141, 232
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	45, 51, 99, 298, 399, 449
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	222, 446
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	211
MspI	CCGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	2 cut(s)	352, 424
NlaIII	CATG	6 cut(s)	20, 118, 290, 312, 399, 413
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	168, 241, 360
Psp124BI	GAGCTC	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	424
PvuII	CAGCTG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	206, 522
RsaNI	GTAC	2 cut(s)	205, 521
SacI	GAGCTC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	82
SaqAI	TTAA	2 cut(s)	222, 446
Sau3AI	GATC	2 cut(s)	352, 424
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	8 cut(s)	77, 110, 139, 213, 222, 391, 453, 469
SfcI	CTRYAG	1 cut(s)	146
Sse9I	AATT	4 cut(s)	10, 46, 141, 232
SstI	GAGCTC	1 cut(s)	77
TaaI	ACNGT	4 cut(s)	202, 337, 434, 474
TasI	AATT	4 cut(s)	10, 46, 141, 232
TfiI	GAWTC	3 cut(s)	168, 241, 360
Tru1I	TTAA	2 cut(s)	222, 446
Tru9I	TTAA	2 cut(s)	222, 446
TscAI	CASTG	3 cut(s)	207, 342, 439
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	5 cut(s)	69, 75, 131, 303, 398
TspRI	CASTG	3 cut(s)	207, 342, 439
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	1 cut(s)	312
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.