Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

3949405 .. 3950430

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTCCGACTATCAGAACCATCGGAACTTACGCTACTCAGCAAAGGTACCTAGTCGATTTCTTTGGAGAAGAGTTTATCGTCATCGTAACGCCGGATCCATCCGTTATCGGCCAATGGATTCACGACGTCCTATCCCACAACCGCTTCTCTTCCCACCCTCTCGTTGTTGGAGTCGGCGTTCAGTGGACACCCTCTAGTTATTACTCTGCTTCTTCACCGGTTCGTTATCGCTCCGATTCTCCTCCGGTTCGTTATCGTTCCGACTCTCCACGGGTTCGTCGTCGCTTCGATCCTCCGGCGGATACTCTGCAGCTATGCGTTGGTAATCGATGTATCATCATCCAGCTTTCTCACTGTGAACGAGTCCCGCAGGTCCTCCGTAATTTCCTGGCGGATCGCGATTACACTTTCGTCGGTATTTGGAATAGTCAAGATGCGGGAAAGCTTAAACGATCTAAACATGAGTTGGAGATTGCGGTGCTTTTGGATTTAAGGAAGTTCGTTTCAGATTCGAGTGGAAGGACCATGAAGCGTTGTTCGTTTGAAAAGATTGTCGAGGAAAATTTGGGTCATTCAGGAGTGAGGCTAGATCGAAAGGTAAGCAGGAGCGATTGGCGCGTTTACGACCTTCGCTACGTTCAGATTCTTCAGGCGTCGATAGATGTTTATGCGTGTTGCAAGCTTGCTATTCTTGACCACCTTTGGGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

238

Amino Acids

27.5

Weight (kDa)

9.04

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	364
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	48
AccII	CGCG	2 cut(s)	402, 621
AciI	CCGC	6 cut(s)	145, 302, 371, 395, 440, 479
AclWI	GGATC	4 cut(s)	92, 105, 287, 405
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	635
AcyI	GRCGYC	2 cut(s)	129, 656
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgeI	ACCGGT	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	390
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	4 cut(s)	316, 349, 448, 685
AluI	AGCT	4 cut(s)	316, 349, 448, 685
AlwI	GGATC	4 cut(s)	92, 105, 287, 405
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	565
AsiGI	ACCGGT	1 cut(s)	220
Asp718I	GGTACC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	2 cut(s)	376, 525
AsuHPI	GGTGA	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	376, 525
BamHI	GGATCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	29, 109
BciT130I	CCWGG	1 cut(s)	392
BciVI	GTATCC	1 cut(s)	298
BfaI	CTAG	3 cut(s)	53, 198, 590
BfmI	CTRYAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	364
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	2 cut(s)	376, 525
BmgT120I	GGNCC	2 cut(s)	376, 525
BmiI	GGNNCC	3 cut(s)	6, 50, 99
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	331
BsaHI	GRCGYC	2 cut(s)	129, 656
BsaJI	CCNNGG	1 cut(s)	272
BsaWI	WCCGGW	2 cut(s)	220, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse118I	RCCGGY	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	392
BseCI	ATCGAT	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	101, 342
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMII	CTCAG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	2 cut(s)	402, 621
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	48
BshTI	ACCGGT	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	331
BsiSI	CCGG	4 cut(s)	95, 221, 248, 299
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	5 cut(s)	97, 292, 397, 455, 592
Bsp68I	TCGCGA	1 cut(s)	402
BspACI	CCGC	6 cut(s)	145, 302, 371, 395, 440, 479
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	52
BspDI	ATCGAT	1 cut(s)	331
BspFNI	CGCG	2 cut(s)	402, 621
BspLI	GGNNCC	3 cut(s)	6, 50, 99
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	4 cut(s)	92, 105, 287, 405
BspT107I	GGYRCC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	5 cut(s)	97, 292, 397, 455, 592
BssNI	GRCGYC	2 cut(s)	129, 656
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	66, 157
BstACI	GRCGYC	2 cut(s)	129, 656
BstC8I	GCNNGC	2 cut(s)	683, 687
BstDEI	CTNAG	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	101, 342
BstFNI	CGCG	2 cut(s)	402, 621
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	5 cut(s)	100, 295, 400, 458, 595
BstMBI	GATC	5 cut(s)	97, 292, 397, 455, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	2 cut(s)	402, 621
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	101, 342
BtsIMutI	CAGTG	2 cut(s)	191, 355
BtuMI	TCGCGA	1 cut(s)	402
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	683, 687
CfoI	GCGC	1 cut(s)	621
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	376, 525
ClaI	ATCGAT	1 cut(s)	331
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	49
CspAI	ACCGGT	1 cut(s)	220
CviAII	CATG	2 cut(s)	464, 529
CviJI	RGCY	7 cut(s)	5, 114, 316, 349, 448, 589, 685
CviKI_1	RGCY	7 cut(s)	5, 114, 316, 349, 448, 589, 685
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	5 cut(s)	99, 294, 399, 457, 594
DpnII	GATC	5 cut(s)	97, 292, 397, 455, 592
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	66, 157
EarI	CTCTTC	2 cut(s)	66, 157
EciI	GGCGGA	2 cut(s)	317, 410
Eco47I	GGWCC	2 cut(s)	376, 525
Eco57I	CTGAAG	1 cut(s)	635
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	390
FaeI	CATG	2 cut(s)	467, 532
FaiI	YATR	4 cut(s)	319, 465, 530, 672
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	2 cut(s)	463, 528
FauI	CCCGC	2 cut(s)	378, 433
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	2 cut(s)	88, 329
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	3 cut(s)	53, 198, 590
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	4 cut(s)	95, 221, 248, 299
HgaI	GACGC	1 cut(s)	645
HhaI	GCGC	1 cut(s)	621
Hin1I	GRCGYC	2 cut(s)	129, 656
Hin1II	CATG	2 cut(s)	467, 532
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HindIII	AAGCTT	2 cut(s)	446, 683
HinfI	GANTC	7 cut(s)	121, 174, 239, 266, 366, 512, 646
HpaII	CCGG	4 cut(s)	95, 221, 248, 299
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	3 cut(s)	189, 362, 625
Hpy188I	TCNGA	7 cut(s)	9, 17, 26, 238, 265, 511, 645
Hpy188III	TCNNGA	5 cut(s)	125, 401, 434, 579, 695
Hpy8I	GTNNAC	3 cut(s)	189, 362, 625
Hpy99I	CGWCG	5 cut(s)	131, 285, 288, 419, 661
HpyAV	CCTTC	2 cut(s)	516, 641
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	2 cut(s)	129, 639
HpyCH4V	TGCA	2 cut(s)	313, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	2 cut(s)	129, 639
Hsp92I	GRCGYC	2 cut(s)	129, 656
Hsp92II	CATG	2 cut(s)	467, 532
HspAI	GCGC	1 cut(s)	619
KpnI	GGTACC	1 cut(s)	52
Kzo9I	GATC	5 cut(s)	97, 292, 397, 455, 592
LmnI	GCTCC	3 cut(s)	10, 239, 609
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	3 cut(s)	53, 198, 590
MaeII	ACGT	2 cut(s)	129, 639
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	5 cut(s)	99, 294, 399, 457, 594
MboI	GATC	5 cut(s)	97, 292, 397, 455, 592
MboII	GAAGA	4 cut(s)	83, 144, 207, 641
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	2 cut(s)	385, 565
MlyI	GAGTC	3 cut(s)	183, 260, 375
MmeI	TCCRAC	4 cut(s)	32, 151, 288, 450
MnlI	CCTC	7 cut(s)	171, 205, 255, 306, 389, 553, 579
MseI	TTAA	2 cut(s)	450, 494
MspI	CCGG	4 cut(s)	95, 221, 248, 299
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	2 cut(s)	402, 621
MwoI	GCNNNNNNNGC	1 cut(s)	618
NdeII	GATC	5 cut(s)	97, 292, 397, 455, 592
NlaIII	CATG	2 cut(s)	467, 532
NlaIV	GGNNCC	3 cut(s)	6, 50, 99
NruI	TCGCGA	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	280
PfeI	GAWTC	4 cut(s)	121, 239, 512, 646
PinAI	ACCGGT	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	3 cut(s)	182, 260, 374
PpsI	GAGTC	3 cut(s)	182, 260, 374
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	3 cut(s)	6, 50, 99
PspPI	GGNCC	2 cut(s)	376, 525
PspPPI	RGGWCCY	1 cut(s)	376
PsrI	GAACNNNNNNTAC	2 cut(s)	19, 51
PstI	CTGCAG	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	97
RruI	TCGCGA	1 cut(s)	402
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	450, 494
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	5 cut(s)	97, 292, 397, 455, 592
Sau96I	GGNCC	2 cut(s)	376, 525
SchI	GAGTC	3 cut(s)	183, 260, 375
ScrFI	CCNGG	1 cut(s)	392
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	311
SinI	GGWCC	2 cut(s)	376, 525
Sse9I	AATT	2 cut(s)	385, 565
SsiI	CCGC	6 cut(s)	145, 302, 371, 395, 440, 479
SspMI	CTAG	3 cut(s)	53, 198, 590
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	2 cut(s)	132, 642
TaqI	TCGA	7 cut(s)	57, 291, 331, 515, 558, 595, 659
TasI	AATT	2 cut(s)	385, 565
TfiI	GAWTC	4 cut(s)	121, 239, 512, 646
Tru1I	TTAA	2 cut(s)	450, 494
Tru9I	TTAA	2 cut(s)	450, 494
TscAI	CASTG	2 cut(s)	191, 362
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	545
TspGWI	ACGGA	2 cut(s)	94, 371
TspRI	CASTG	2 cut(s)	191, 362
VpaK11BI	GGWCC	2 cut(s)	376, 525
XapI	RAATTY	1 cut(s)	565
XspI	CTAG	3 cut(s)	53, 198, 590
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.