Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001899

Physical Location & Seq

Genomic Coordinates Reverse (-)

3954514 .. 3955550

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTCCGACAATCAGAACCATCGGATCTTACGCTACTCAGCAAAGGTACTCAGTCGATTTCTTTGGAGAAGAGCTTTTCGTCACCGTAACGCCGGATCCTTCCGTCATCGGCCAATGGATTCACGACGTCTTCTTCCACAACCGTCTCTCTTCTCACCCTCTCGTCGTTGGAGTCGGCGTTCAGTGGACACCCTCTGGTTACCACCCTGCTTCTCCACCGGTTAGTTATCGTTCCGATTCTTCTCCGGACAGTTATCGCTCCGATTCTCCACCGGTTTTCTATAGCTCCGATCCTCCGGCGGATACTCTGCAGCTATGCGTTGGTAATCGATGTATCATCATCCAACTCCGTTACTGTGAACGCGTCCCGCAGGTCCTCCGTAATTTCCTCGCGGATCGAGATAACACGTTCGTCGGAATTTGGAATAGTCAAGATGCAGGAAAGCTAGAGAGATCTAGACATCAGTTGGAGATTGCGGAGCTTATGGATTTGAGGGAATTTGTTTCAGATTCGAGTGGACGGAGATCGATGTATAATTATTCGCTTGAGAAGATTGTTGAGGAAAATTTAGGTTATCCAGGAGTGAGGCTAGATCGAGAGGTAAGCATGAGCGATTGGCGCGTTTACAACCTTAGCTACGATCAGATTCTTCAGGCGTCGATAGATGTTTATGCGTGTTGCAGCCTTGCTATTCTAGACCATCTGTGGGAAGAAAAGAATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0030145 GO:0031974 GO:0031981 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

242

Amino Acids

27.71

Weight (kDa)

5.12

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36110 AT3G12410 AT3G12420 AT3G12430 AT3G12440 AT3G12460 AT3G12470
fragaria_vesca	FvH4_1g07360 FvH4_3g40510 FvH4_3g40510 FvH4_3g40510
malus_domestica	MD03G1253300.v1.1 MD09G1279200.v1.1 MD12G1053400.v1.1 MD14G1051900.v1.1
prunus_persica	Prupe.4G179100_v2.0.a1 Prupe.7G019000_v2.0.a1
pyrus_communis	pycom03g20090
rosa_chinensis	RchiOBHm_Chr5g0073181
rosa_laevigata	RLG00000005619 RLG00000016382 RLG00000036371
rosa_roxburghii	Rroxscaffold_1G00008010 Rroxscaffold_2G00148370 Rroxscaffold_5G00387270
rosa_rugosa	Rorug04G0376400 Rorug05G0421700 Rorug05G0421800
rosa_samantha	Rh2AG080000 Rh2AG080100 Rh2BG081000 Rh2BG081100 Rh2CG083400 Rh2CG083500 Rh2DG079000 Rh4AG437700 Rh4BG446600 Rh4CG463900 Rh4DG445300 Rh5AG478700 Rh5BG499400 Rh5CG522600 Rh5DG511500
rosa_wichuraiana	Rw2G006690 Rw4G037430 Rw5G044490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	364
AccII	CGCG	3 cut(s)	366, 395, 624
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	4 cut(s)	302, 371, 395, 479
AclWI	GGATC	5 cut(s)	34, 92, 105, 287, 405
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	3 cut(s)	420, 500, 568
AcuI	CTGAAG	1 cut(s)	638
AcyI	GRCGYC	2 cut(s)	129, 659
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflIII	ACRYGT	2 cut(s)	364, 408
AgeI	ACCGGT	2 cut(s)	220, 274
AjnI	CCWGG	1 cut(s)	580
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	6 cut(s)	76, 288, 316, 448, 484, 639
AluI	AGCT	6 cut(s)	76, 288, 316, 448, 484, 639
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	5 cut(s)	34, 92, 105, 287, 405
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	313, 684
ApoI	RAATTY	3 cut(s)	420, 500, 568
AsiGI	ACCGGT	2 cut(s)	220, 274
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	76, 149
AvaII	GGWCC	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	325, 696
BccI	CCATC	2 cut(s)	29, 711
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	4 cut(s)	449, 459, 593, 698
BfmI	CTRYAG	2 cut(s)	283, 311
BfuAI	ACCTGC	1 cut(s)	364
BfuI	GTATCC	1 cut(s)	298
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	2 cut(s)	314, 685
BlsI	GCNGC	2 cut(s)	315, 686
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	2 cut(s)	6, 99
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	569
Bsa29I	ATCGAT	2 cut(s)	331, 530
BsaHI	GRCGYC	2 cut(s)	129, 659
BsaWI	WCCGGW	3 cut(s)	220, 247, 274
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse118I	RCCGGY	2 cut(s)	220, 274
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	582
BseCI	ATCGAT	2 cut(s)	331, 530
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	2 cut(s)	53, 66
BseXI	GCAGC	2 cut(s)	325, 696
Bsh1236I	CGCG	3 cut(s)	366, 395, 624
BshFI	GGCC	1 cut(s)	114
BshTI	ACCGGT	2 cut(s)	220, 274
BshVI	ATCGAT	2 cut(s)	331, 530
BsiSI	CCGG	5 cut(s)	95, 221, 248, 275, 299
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	114
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	8 cut(s)	26, 97, 292, 397, 455, 527, 595, 643
BspACI	CCGC	4 cut(s)	302, 371, 395, 479
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	52, 65
BspDI	ATCGAT	2 cut(s)	331, 530
BspEI	TCCGGA	1 cut(s)	247
BspFNI	CGCG	3 cut(s)	366, 395, 624
BspLI	GGNNCC	2 cut(s)	6, 99
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	5 cut(s)	34, 92, 105, 287, 405
BspQI	GCTCTTC	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	220, 274
BssAI	RCCGGY	2 cut(s)	220, 274
BssMI	GATC	8 cut(s)	26, 97, 292, 397, 455, 527, 595, 643
BssNI	GRCGYC	2 cut(s)	129, 659
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	4 cut(s)	88, 146, 254, 359
Bst6I	CTCTTC	2 cut(s)	66, 157
BstACI	GRCGYC	2 cut(s)	129, 659
BstDEI	CTNAG	3 cut(s)	39, 52, 635
BstEII	GGTNACC	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	342
BstFNI	CGCG	3 cut(s)	366, 395, 624
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	8 cut(s)	29, 100, 295, 400, 458, 530, 598, 646
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	8 cut(s)	26, 97, 292, 397, 455, 527, 595, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	621
BstNI	CCWGG	1 cut(s)	582
BstPI	GGTNACC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	580
BstSFI	CTRYAG	2 cut(s)	283, 311
BstUI	CGCG	3 cut(s)	366, 395, 624
BstV1I	GCAGC	2 cut(s)	325, 696
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	3 cut(s)	26, 97, 455
BstYI	RGATCY	3 cut(s)	26, 97, 455
Bsu15I	ATCGAT	2 cut(s)	331, 530
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	114
BsuTUI	ATCGAT	2 cut(s)	331, 530
BtsCI	GGATG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	191
BveI	ACCTGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	624
Cfr10I	RCCGGY	2 cut(s)	220, 274
Cfr13I	GGNCC	1 cut(s)	376
ClaI	ATCGAT	2 cut(s)	331, 530
CseI	GACGC	2 cut(s)	355, 648
Csp6I	GTAC	1 cut(s)	49
CspAI	ACCGGT	2 cut(s)	220, 274
CviAII	CATG	1 cut(s)	610
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	3 cut(s)	39, 52, 635
DpnI	GATC	8 cut(s)	28, 99, 294, 399, 457, 529, 597, 645
DpnII	GATC	8 cut(s)	26, 97, 292, 397, 455, 527, 595, 643
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	66, 157
EarI	CTCTTC	2 cut(s)	66, 157
EciI	GGCGGA	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	638
Eco91I	GGTNACC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	376
EcoO65I	GGTNACC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	1 cut(s)	613
FaiI	YATR	6 cut(s)	285, 319, 488, 537, 611, 675
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	609
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	314, 685
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	314, 685
FspBI	CTAG	4 cut(s)	449, 459, 593, 698
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	2 cut(s)	314, 685
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	5 cut(s)	95, 221, 248, 275, 299
HgaI	GACGC	2 cut(s)	355, 648
HhaI	GCGC	1 cut(s)	624
Hin1I	GRCGYC	2 cut(s)	129, 659
Hin1II	CATG	1 cut(s)	613
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	7 cut(s)	121, 174, 239, 266, 512, 649, 721
HpaII	CCGG	5 cut(s)	95, 221, 248, 275, 299
HphI	GGTGA	2 cut(s)	76, 149
Hpy166II	GTNNAC	4 cut(s)	189, 362, 521, 628
Hpy188I	TCNGA	9 cut(s)	9, 17, 26, 238, 265, 292, 419, 511, 648
Hpy188III	TCNNGA	7 cut(s)	125, 248, 401, 434, 459, 599, 698
Hpy8I	GTNNAC	4 cut(s)	189, 362, 521, 628
Hpy99I	CGWCG	4 cut(s)	131, 170, 419, 664
HpyAV	CCTTC	1 cut(s)	111
HpyCH4III	ACNGT	4 cut(s)	88, 146, 254, 359
HpyCH4IV	ACGT	2 cut(s)	129, 410
HpyCH4V	TGCA	3 cut(s)	313, 440, 684
HpyF10VI	GCNNNNNNNGC	1 cut(s)	621
HpyF3I	CTNAG	3 cut(s)	39, 52, 635
HpySE526I	ACGT	2 cut(s)	129, 410
Hsp92I	GRCGYC	2 cut(s)	129, 659
Hsp92II	CATG	1 cut(s)	613
HspAI	GCGC	1 cut(s)	622
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	8 cut(s)	26, 97, 292, 397, 455, 527, 595, 643
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	4 cut(s)	10, 266, 293, 481
Lsp1109I	GCAGC	2 cut(s)	325, 696
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	4 cut(s)	449, 459, 593, 698
MaeII	ACGT	2 cut(s)	129, 410
MaeIII	GTNAC	4 cut(s)	82, 88, 200, 353
MalI	GATC	8 cut(s)	28, 99, 294, 399, 457, 529, 597, 645
MboI	GATC	8 cut(s)	26, 97, 292, 397, 455, 527, 595, 643
MboII	GAAGA	8 cut(s)	83, 124, 127, 144, 234, 565, 644, 725
MflI	RGATCY	3 cut(s)	26, 97, 455
MluCI	AATT	5 cut(s)	385, 420, 500, 538, 568
MluI	ACGCGT	1 cut(s)	364
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	5 cut(s)	32, 151, 370, 397, 450
MnlI	CCTC	9 cut(s)	171, 205, 306, 389, 401, 489, 556, 582, 595
MroI	TCCGGA	1 cut(s)	247
MspI	CCGG	5 cut(s)	95, 221, 248, 275, 299
MspR9I	CCNGG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	582
MvnI	CGCG	3 cut(s)	366, 395, 624
MwoI	GCNNNNNNNGC	1 cut(s)	621
NdeII	GATC	8 cut(s)	26, 97, 292, 397, 455, 527, 595, 643
NlaIII	CATG	1 cut(s)	613
NlaIV	GGNNCC	2 cut(s)	6, 99
NmuCI	GTSAC	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	66
PfeI	GAWTC	6 cut(s)	121, 239, 266, 512, 649, 721
PfoI	TCCNGGA	1 cut(s)	580
PinAI	ACCGGT	2 cut(s)	220, 274
PkrI	GCNGC	2 cut(s)	315, 686
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	580
PspEI	GGTNACC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	6, 99
PspPI	GGNCC	1 cut(s)	376
PspPPI	RGGWCCY	1 cut(s)	376
PstI	CTGCAG	1 cut(s)	315
PsuI	RGATCY	3 cut(s)	26, 97, 455
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	2 cut(s)	314, 685
Sau3AI	GATC	8 cut(s)	26, 97, 292, 397, 455, 527, 595, 643
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	582
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	2 cut(s)	283, 311
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	5 cut(s)	385, 420, 500, 538, 568
SsiI	CCGC	4 cut(s)	302, 371, 395, 479
SspMI	CTAG	4 cut(s)	449, 459, 593, 698
StyD4I	CCNGG	1 cut(s)	580
TaaI	ACNGT	4 cut(s)	88, 146, 254, 359
TaiI	ACGT	2 cut(s)	132, 413
TaqI	TCGA	7 cut(s)	57, 331, 400, 515, 530, 598, 662
TasI	AATT	5 cut(s)	385, 420, 500, 538, 568
TfiI	GAWTC	6 cut(s)	121, 239, 266, 512, 649, 721
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	313, 684
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	4 cut(s)	94, 341, 371, 538
TspRI	CASTG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	3 cut(s)	420, 500, 568
XbaI	TCTAGA	2 cut(s)	458, 697
XspI	CTAG	4 cut(s)	449, 459, 593, 698
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.