Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Reverse (-)

15886548 .. 15889258

Gene Structure 2711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGCGAGATCAAACAGATCCAAGACTTCAGAGCGTATAATAGGCAATGGTGAAGTTACTCCGATTCAAGTCGCCTTCCTCGTCGATCGATACCTCTGCGATAATCGCTTTTCAAAAACCAGATCACTTTTCAGATCTGAAGCTTCTTCTCTCATCTCTAATTCTCCAGTTCGCGAAGTTCCGAATAGTTTGTTACCTTTGAATGAGATTTTAAACGAATACATTCGTCTCAAGAAGGAGAAGATTGTGATGGATCAGGAGAAATCGAAACTGGATCAAGAGAAAACTCGAGTTCAGAATCTATTGAATGGGATGCAAGATGTGATGAATGCTTATAACTCCTCCACCGCCGCAGCTCCTCCTCCTCCTCCGGTGATTACGTCGGCAGCTCCCATGGATAAACAAGTAGTTGCTTCTACTTCTAAACAGAACAATTTCGGCGTCTCTTCTTCAGGCTGCACTGTGTACAATACACAAAATGCTATGACAGTATCATTACCAGGAAACAAAAGAGTTGGGAATTTCACAGGACCTTGTATCACTCAGTCTATAACCAAAAAGAGAAAGAGTCCTGAAGTTTCTGTAGGAGCTCCTTCTGTTTCTAGGAAAGGTATGAAAAAGATCCCACAAGCTGCTAATTACTTGACATTTCAAACACCATCTGAAATGCAAACGCCATTGAACAATGGTGTAGCTACTAATGAGTCGTCTGATCTTACATCAAGTGTGGCAAAGTGTTTGTTTGACAAATCAGGCACGTCTCCTCCGAGCAACTCAACTTGTCCTAGGACACCACAACAGAAAGTATCTCCTCAGAGTGATAAAGAAGTGACTCCTACAAACTGCACAATTGTTACTAAGGAGAGAATCACAGTCAGTCCTCTCAAACAAATTGCTTCTTATACAGTGGAGAGGAGCCATACGGTTTCTTCTTTTTCGCCAGTTAAGTCTAATCTGAAAATGTCGAGTAAAAGAGATCATGTGAAAGGAAGGCTCAACTTCGATGATACTGAAGCCACAATGCACTTAGACGCACCTGCCACTGTGGATATGGTTTCAACTTCCTCATCTGGCTCTGAAGCAGAAGCTGATTTATTTGACATTGATTTTTCCAATATAGATCTTCTGAGTGAAGACTTTTCATTTTCGGAGCTACTATTCGATTTTGATATTGGTTGTGAAGAAATGTCAAACCATTCCCTACCACAGCCATCAAATTTCCACATAGAGACTGCTTCAGGGTCATCTCCTGAATCAAGAAACACGAATCTAGAGCCTGACCAGGTTGTATCAGAGTATACATCAACAGTAACAGAAATGATTCAAGGGAAAGACATGAACACACAAGGATCTGACTCTATGACTACTGTAAAGTCCATAACAAAATGCCTACGAATCTTAAGTCCTGCCAAGAATTGCAGACAGAGAGTCACACTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

480

Amino Acids

52.48

Weight (kDa)

7.51

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AarI	CACCTGC	1 cut(s)	1045
Acc36I	ACCTGC	1 cut(s)	1045
AccI	GTMKAC	1 cut(s)	1298
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	348, 351
AclWI	GGATC	5 cut(s)	12, 261, 282, 616, 1357
AcsI	RAATTY	2 cut(s)	520, 1216
AcuI	CTGAAG	7 cut(s)	12, 159, 435, 594, 1032, 1098, 1221
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	467
AflII	CTTAAG	1 cut(s)	1399
AgsI	TTSAA	8 cut(s)	68, 114, 202, 307, 653, 682, 1059, 1325
AhdI	GACNNNNNGTC	1 cut(s)	1427
AjiI	CACGTC	1 cut(s)	759
AjnI	CCWGG	2 cut(s)	499, 1281
AluBI	AGCT	8 cut(s)	143, 356, 389, 590, 632, 695, 1088, 1153
AluI	AGCT	8 cut(s)	143, 356, 389, 590, 632, 695, 1088, 1153
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	4 cut(s)	233, 448, 765, 1223
AlwI	GGATC	5 cut(s)	12, 261, 282, 616, 1357
AlwNI	CAGNNNCTG	1 cut(s)	1088
Ama87I	CYCGRG	1 cut(s)	288
ApeKI	GCWGC	4 cut(s)	353, 386, 456, 632
ApoI	RAATTY	2 cut(s)	520, 1216
ArsI	GACNNNNNNTTYG	2 cut(s)	1387, 1419
Asp700I	GAANNNNTTC	3 cut(s)	222, 434, 1320
AspA2I	CCTAGG	1 cut(s)	785
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	2 cut(s)	62, 385
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	530
AvrII	CCTAGG	1 cut(s)	785
BanII	GRGCYC	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	4 cut(s)	365, 398, 443, 619
BccI	CCATC	3 cut(s)	244, 667, 1219
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	2 cut(s)	501, 1283
BcoDI	GTCTC	4 cut(s)	233, 448, 765, 1223
BfaI	CTAG	3 cut(s)	603, 786, 1271
BfmI	CTRYAG	1 cut(s)	582
BfrI	CTTAAG	1 cut(s)	1399
BfuAI	ACCTGC	1 cut(s)	1045
BglII	AGATCT	2 cut(s)	134, 1120
BisI	GCNGC	5 cut(s)	351, 354, 387, 457, 633
BlnI	CCTAGG	1 cut(s)	785
BlsI	GCNGC	5 cut(s)	352, 355, 388, 458, 634
Bme1390I	CCNGG	2 cut(s)	501, 1283
Bme18I	GGWCC	1 cut(s)	530
BmeRI	GACNNNNNGTC	1 cut(s)	1427
BmeT110I	CYCGRG	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	917
BmrFI	CCNGG	2 cut(s)	501, 1283
BmsI	GCATC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	1140
BpmI	CTGGAG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	393, 785
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	748, 778
Bse1I	ACTGG	3 cut(s)	167, 276, 941
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	501, 1283
BseCI	ATCGAT	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	393, 785
BseGI	GGATG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	3 cut(s)	557, 827, 1118
BseNI	ACTGG	3 cut(s)	167, 276, 941
BseRI	GAGGAG	8 cut(s)	331, 348, 351, 354, 357, 753, 801, 928
BseXI	GCAGC	4 cut(s)	365, 398, 443, 619
BsgI	GTGCAG	2 cut(s)	442, 829
Bsh1236I	CGCG	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	88
BshVI	ATCGAT	1 cut(s)	88
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	592
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	371
BsmAI	GTCTC	4 cut(s)	233, 448, 765, 1223
BsmBI	CGTCTC	3 cut(s)	233, 448, 765
BsmI	GAATGC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp1407I	TGTACA	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	393
Bsp68I	TCGCGA	1 cut(s)	174
BspACI	CCGC	2 cut(s)	348, 351
BspCNI	CTCAG	3 cut(s)	556, 826, 1119
BspDI	ATCGAT	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	917
BspMI	ACCTGC	1 cut(s)	1045
BspPI	GGATC	5 cut(s)	12, 261, 282, 616, 1357
BspTI	CTTAAG	1 cut(s)	1399
BsrDI	GCAATG	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	3 cut(s)	167, 276, 941
BssECI	CCNNGG	2 cut(s)	393, 785
BssNAI	GTATAC	1 cut(s)	1299
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	2 cut(s)	393, 785
Bst1107I	GTATAC	1 cut(s)	1299
Bst2UI	CCWGG	2 cut(s)	501, 1283
Bst4CI	ACNGT	8 cut(s)	463, 490, 874, 907, 925, 1045, 1309, 1369
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	1399
BstAUI	TGTACA	1 cut(s)	465
BstDEI	CTNAG	5 cut(s)	543, 813, 858, 1027, 1127
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	174
BstMAI	GTCTC	4 cut(s)	233, 448, 765, 1223
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	2 cut(s)	501, 1283
BstSCI	CCNGG	2 cut(s)	499, 1281
BstSFI	CTRYAG	1 cut(s)	582
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	4 cut(s)	365, 398, 443, 619
BstV2I	GAAGAC	1 cut(s)	1140
BstX2I	RGATCY	5 cut(s)	17, 134, 621, 1120, 1349
BstYI	RGATCY	5 cut(s)	17, 134, 621, 1120, 1349
BstZ17I	GTATAC	1 cut(s)	1299
Bsu15I	ATCGAT	1 cut(s)	88
BsuTUI	ATCGAT	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	318
BtsIMutI	CAGTG	3 cut(s)	459, 912, 1041
BtuMI	TCGCGA	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	1045
CaiI	CAGNNNCTG	1 cut(s)	1088
Cfr13I	GGNCC	1 cut(s)	530
ClaI	ATCGAT	1 cut(s)	88
CseI	GACGC	2 cut(s)	430, 1040
CsiI	ACCWGGT	1 cut(s)	1281
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	3 cut(s)	394, 980, 1336
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	5 cut(s)	543, 813, 858, 1027, 1127
DraI	TTTAAA	1 cut(s)	213
DriI	GACNNNNNGTC	1 cut(s)	1427
Eam1104I	CTCTTC	1 cut(s)	451
Eam1105I	GACNNNNNGTC	1 cut(s)	1427
EarI	CTCTTC	1 cut(s)	451
Ecl136II	GAGCTC	1 cut(s)	590
Eco130I	CCWWGG	2 cut(s)	393, 785
Eco24I	GRGCYC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	590
Eco57I	CTGAAG	7 cut(s)	12, 159, 435, 594, 1032, 1098, 1221
Eco88I	CYCGRG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	590
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	499, 1281
EcoT14I	CCWWGG	2 cut(s)	393, 785
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	2 cut(s)	393, 785
Esp3I	CGTCTC	3 cut(s)	233, 448, 765
FaeI	CATG	3 cut(s)	397, 983, 1339
FatI	CATG	3 cut(s)	393, 979, 1335
FblI	GTMKAC	1 cut(s)	1298
Fnu4HI	GCNGC	5 cut(s)	351, 354, 387, 457, 633
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	5 cut(s)	351, 354, 387, 457, 633
FspBI	CTAG	3 cut(s)	603, 786, 1271
GluI	GCNGC	5 cut(s)	351, 354, 387, 457, 633
GsuI	CTGGAG	1 cut(s)	150
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	2 cut(s)	430, 1040
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	3 cut(s)	397, 983, 1339
HindIII	AAGCTT	1 cut(s)	141
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	2 cut(s)	62, 385
Hpy166II	GTNNAC	2 cut(s)	466, 1299
Hpy188III	TCNNGA	8 cut(s)	173, 232, 257, 278, 572, 1250, 1257, 1271
Hpy8I	GTNNAC	2 cut(s)	466, 1299
Hpy99I	CGWCG	2 cut(s)	86, 385
HpyAV	CCTTC	4 cut(s)	85, 229, 603, 984
HpyCH4III	ACNGT	8 cut(s)	463, 490, 874, 907, 925, 1045, 1309, 1369
HpyCH4IV	ACGT	2 cut(s)	380, 758
HpyCH4V	TGCA	6 cut(s)	316, 459, 670, 846, 1024, 1419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	5 cut(s)	543, 813, 858, 1027, 1127
HpySE526I	ACGT	2 cut(s)	380, 758
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	3 cut(s)	397, 983, 1339
LmnI	GCTCC	6 cut(s)	361, 394, 587, 595, 915, 1150
Lsp1109I	GCAGC	4 cut(s)	365, 398, 443, 619
LweI	GCATC	1 cut(s)	303
MabI	ACCWGGT	1 cut(s)	1281
MaeI	CTAG	3 cut(s)	603, 786, 1271
MaeII	ACGT	2 cut(s)	380, 758
MaeIII	GTNAC	6 cut(s)	55, 192, 829, 853, 1309, 1429
MboII	GAAGA	8 cut(s)	138, 253, 438, 441, 921, 1115, 1145, 1193
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	5 cut(s)	17, 134, 621, 1120, 1349
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	8 cut(s)	160, 433, 520, 637, 849, 891, 1216, 1414
MlyI	GAGTC	5 cut(s)	577, 713, 826, 1349, 1437
MroXI	GAANNNNTTC	3 cut(s)	222, 434, 1320
MseI	TTAA	3 cut(s)	212, 945, 1400
MspCI	CTTAAG	1 cut(s)	1399
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	501, 1283
MunI	CAATTG	1 cut(s)	849
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	501, 1283
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	393
NlaIII	CATG	3 cut(s)	397, 983, 1339
NlaIV	GGNNCC	1 cut(s)	917
NmuCI	GTSAC	2 cut(s)	829, 1429
NruI	TCGCGA	1 cut(s)	174
PaeR7I	CTCGAG	1 cut(s)	288
PaqCI	CACCTGC	1 cut(s)	1045
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 764
PctI	GAATGC	1 cut(s)	334
PdmI	GAANNNNTTC	3 cut(s)	222, 434, 1320
PfeI	GAWTC	7 cut(s)	64, 298, 867, 1253, 1267, 1321, 1395
PkrI	GCNGC	5 cut(s)	352, 355, 388, 458, 634
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	5 cut(s)	576, 712, 826, 1349, 1436
PpsI	GAGTC	5 cut(s)	576, 712, 826, 1349, 1436
PpuMI	RGGWCCY	1 cut(s)	530
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	592
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	499, 1281
PspGI	CCWGG	2 cut(s)	499, 1281
PspN4I	GGNNCC	1 cut(s)	917
PspPI	GGNCC	1 cut(s)	530
PspPPI	RGGWCCY	1 cut(s)	530
PspXI	VCTCGAGB	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	5 cut(s)	17, 134, 621, 1120, 1349
PvuI	CGATCG	1 cut(s)	88
RruI	TCGCGA	1 cut(s)	174
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SacI	GAGCTC	1 cut(s)	592
SaqAI	TTAA	3 cut(s)	212, 945, 1400
SatI	GCNGC	5 cut(s)	351, 354, 387, 457, 633
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	5 cut(s)	577, 713, 826, 1349, 1437
ScrFI	CCNGG	2 cut(s)	501, 1283
SduI	GDGCHC	1 cut(s)	592
SexAI	ACCWGGT	1 cut(s)	1281
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	582
Sfr274I	CTCGAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	530
SlaI	CTCGAG	1 cut(s)	288
SmlI	CTYRAG	3 cut(s)	230, 288, 1399
SmoI	CTYRAG	3 cut(s)	230, 288, 1399
Sse9I	AATT	8 cut(s)	160, 433, 520, 637, 849, 891, 1216, 1414
SsiI	CCGC	2 cut(s)	348, 351
SspMI	CTAG	3 cut(s)	603, 786, 1271
SstI	GAGCTC	1 cut(s)	592
StyD4I	CCNGG	2 cut(s)	499, 1281
StyI	CCWWGG	2 cut(s)	393, 785
TaaI	ACNGT	8 cut(s)	463, 490, 874, 907, 925, 1045, 1309, 1369
TaiI	ACGT	2 cut(s)	383, 761
TaqI	TCGA	7 cut(s)	84, 88, 266, 289, 965, 1002, 1161
TasI	AATT	8 cut(s)	160, 433, 520, 637, 849, 891, 1216, 1414
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	7 cut(s)	64, 298, 867, 1253, 1267, 1321, 1395
Tru1I	TTAA	3 cut(s)	212, 945, 1400
Tru9I	TTAA	3 cut(s)	212, 945, 1400
TscAI	CASTG	3 cut(s)	466, 912, 1048
TseFI	GTSAC	2 cut(s)	829, 1429
TseI	GCWGC	4 cut(s)	353, 386, 456, 632
Tsp45I	GTSAC	2 cut(s)	829, 1429
TspDTI	ATGAA	4 cut(s)	341, 629, 1131, 1352
TspRI	CASTG	3 cut(s)	466, 912, 1048
Vha464I	CTTAAG	1 cut(s)	1399
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	2 cut(s)	520, 1216
XbaI	TCTAGA	1 cut(s)	1270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1048
XhoI	CTCGAG	1 cut(s)	288
XmaJI	CCTAGG	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	1298
XmnI	GAANNNNTTC	3 cut(s)	222, 434, 1320
XspI	CTAG	3 cut(s)	603, 786, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.