pycom12g14980

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
17427713 .. 17429701
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g14980.1

Sequence Viewer

Length: 1446 bp
ATGGGGAAGCAATCCAAAGGCAAGAAATCTGAGAACTTGGGGAAGGGAAAAGTCACCCCCGTCCAAATCGCCTTCATCGTCGACCGATACCTCTGCGACAACAACTACTCGGAAACCCGCTCTCTTTTCAGAACCGAAGCTTCGTCCCTCATCGCCAAATCGCCGATTCGAGAGGCGCCAAAGAGTTTGCTGAGCTTGGCGGAGATTTTGGACGAGTACATACTGTTGAAGGAGCAGAAGGTGATTTTGGATCAGGAGAAGGTCCGGGTGGAGCAGGAGAAGACCCGGGTCCAAACCCTGTTGAAGGGGATGCAAAGCGTGATGAACACTTACAATGCCGGCAGTAGCCCCACTGTCTCTGCACCTCCGGCTGTGGCTCTGAAGCCGATGATTATGGCTACTCCGTCTCACCCGTCTAATGGGTCCGCTGTAGGTACAATCCTAAGCCTCCCCGTCTGGTTGTTTGCTTTGTGTTTGAAAAATTGCCTGAATGAATTGAGAAATCTTGTGGAAGTTGCATGTTTAGAGATTGCTCCTGTGTCAACACCTTCCAACCCCAACATGAGGCCTGGGAATTTCTGCTCGCCAATTACAGTTGACCCACCTACAACTAAGAGAAAGAGTTCTAACGTTCCTGTGAATGGTTCGAATGCTGCTAAGAGATCTTGCAGCAAATTACCTGCTGGCAAGAGCAATATGCACAACAAAGGAGAACAAGCGGTTTCAGGATCAGGTAATGCACTCGATAATAAAAAATCCACCCAATCCTCTTTGGCTGTTCACCCATCACCTCACGATTTGGTTCCCAATGGCTCCACTGCAGCTAAATGCTTGTTCAACCAGCCATCATTTTCTGTCCCAACTAATAACTCTGGTCCTCAGACACCTCAGCGAGCAAATTCATTTCAAGGCAGCAAGTCTACACCTTTTGAGATTTCTTCCACTGCTACTTGCAGTTATAATTCTCCTCCAGATGTAAATCCAACTTGCACCATTTTTTCTTCAAAGAGAGTGACTCTGAGCCCAAACAAATCTTGCTACACTGTGGAAACAAACCATTGCATTTCTTCACCTGCCAAGACAAGTAAGAGGGAGTCCCACGTAAAGGGAAGGCTCAATTTTGACTGTTCTGATGTGCCAATGGGCTTGGAGAAACCATCTGGCGATGAGATTTCATCACCCGAGTCTGAAAAGGAAGTTGATCTCTTCGACATTGATTTGACGAACTTTGATGCCATTGGGGCGGATTTCTCCTTCACTGAAATGTTAGGTGAATTTGATCTTCATTGTGAAGAACTTGGTCTACCAAACTTTGATGCTTCCACTGCGACGGTTTCGGGGTATTCTCTACCTTCCATACTTTACATCACAACTACTACAGTATTCTCTTCACTACTTTCATTTCACTTCAATTTTCTTATGTTCTCTTCTACAAAACTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

482

Amino Acids

51.92

Weight (kDa)

8.14

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
AarI CACCTGC 1 cut(s) 1081
Acc36I ACCTGC 2 cut(s) 688, 1081
AccB1I GGYRCC 1 cut(s) 175
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 3 cut(s) 81, 920, 1303
AciI CCGC 5 cut(s) 118, 200, 426, 719, 1244
AclI AACGTT 1 cut(s) 630
AclWI GGATC 2 cut(s) 258, 736
AcsI RAATTY 3 cut(s) 574, 898, 1274
AcuI CTGAAG 1 cut(s) 401
AcyI GRCGYC 1 cut(s) 176
AfaI GTAC 2 cut(s) 218, 436
AfiI CCNNNNNNNGG 5 cut(s) 304, 419, 564, 641, 1105
AgsI TTSAA 7 cut(s) 229, 304, 478, 838, 908, 1005, 1411
AjnI CCWGG 1 cut(s) 568
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 3 cut(s) 140, 195, 824
AluI AGCT 3 cut(s) 140, 195, 824
Alw26I GTCTC 2 cut(s) 361, 411
AlwI GGATC 2 cut(s) 258, 736
Ama87I CYCGRG 2 cut(s) 285, 1181
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 4 cut(s) 653, 669, 821, 912
ApoI RAATTY 3 cut(s) 574, 898, 1274
Asp700I GAANNNNTTC 1 cut(s) 622
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 4 cut(s) 262, 289, 423, 875
AsuC2I CCSGG 3 cut(s) 266, 286, 287
AsuHPI GGTGA 8 cut(s) 46, 253, 401, 773, 780, 1062, 1170, 1283
AsuII TTCGAA 1 cut(s) 647
AvaI CYCGRG 2 cut(s) 285, 1181
AvaII GGWCC 4 cut(s) 262, 289, 423, 875
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 1025
BbsI GAAGAC 1 cut(s) 287
BbvCI CCTCAGC 1 cut(s) 888
BbvI GCAGC 4 cut(s) 640, 681, 833, 924
BccI CCATC 3 cut(s) 793, 853, 1165
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 1 cut(s) 570
BcnI CCSGG 3 cut(s) 266, 286, 287
BcoDI GTCTC 2 cut(s) 361, 411
BfmI CTRYAG 3 cut(s) 429, 819, 1377
BfoI RGCGCY 1 cut(s) 179
BfuAI ACCTGC 2 cut(s) 688, 1081
BglI GCCNNNNNGGC 1 cut(s) 1241
BglII AGATCT 1 cut(s) 662
BisI GCNGC 4 cut(s) 654, 670, 822, 913
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 4 cut(s) 655, 671, 823, 914
Bme1390I CCNGG 4 cut(s) 266, 286, 287, 570
Bme18I GGWCC 4 cut(s) 262, 289, 423, 875
BmeT110I CYCGRG 2 cut(s) 285, 1181
BmgT120I GGNCC 4 cut(s) 262, 289, 423, 875
BmiI GGNNCC 5 cut(s) 177, 290, 424, 804, 814
BmrFI CCNGG 4 cut(s) 266, 286, 287, 570
BmsI GCATC 3 cut(s) 300, 1222, 1306
BoxI GACNNNNGTC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 1000, 1032
BpmI CTGGAG 1 cut(s) 954
Bpu10I CCTNAGC 2 cut(s) 443, 888
Bpu1102I GCTNAGC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 647
BpuMI CCSGG 3 cut(s) 266, 286, 287
BsaAI YACGTR 1 cut(s) 1102
BsaBI GATNNNNATC 1 cut(s) 978
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 285, 569
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 419, 564, 641, 1105
Bse118I RCCGGY 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 1057
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 285, 569
BseGI GGATG 1 cut(s) 315
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 5 cut(s) 304, 419, 564, 641, 1105
BseMI GCAATG 1 cut(s) 1057
BseMII CTCAG 5 cut(s) 21, 182, 893, 902, 1010
BseRI GAGGAG 1 cut(s) 957
BseXI GCAGC 4 cut(s) 640, 681, 833, 924
BsgI GTGCAG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 568
BshNI GGYRCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 85
BsiHKCI CYCGRG 2 cut(s) 285, 1181
BsiSI CCGG 4 cut(s) 265, 286, 339, 368
BslFI GGGAC 3 cut(s) 130, 842, 1081
BslI CCNNNNNNNGG 5 cut(s) 304, 419, 564, 641, 1105
BsmAI GTCTC 2 cut(s) 361, 411
BsmBI CGTCTC 1 cut(s) 411
BsmFI GGGAC 3 cut(s) 130, 842, 1081
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 1 cut(s) 568
BsoBI CYCGRG 2 cut(s) 285, 1181
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 1025
Bsp143I GATC 5 cut(s) 250, 662, 728, 1201, 1279
Bsp1720I GCTNAGC 1 cut(s) 191
BspACI CCGC 5 cut(s) 118, 200, 426, 719, 1244
BspANI GGCC 1 cut(s) 568
BspCNI CTCAG 5 cut(s) 22, 183, 892, 901, 1011
BspLI GGNNCC 5 cut(s) 177, 290, 424, 804, 814
BspMAI CTGCAG 1 cut(s) 823
BspMI ACCTGC 2 cut(s) 688, 1081
BspPI GGATC 2 cut(s) 258, 736
BspT104I TTCGAA 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 1057
BsrFI RCCGGY 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 285, 569
BssMI GATC 5 cut(s) 250, 662, 728, 1201, 1279
BssNI GRCGYC 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 7 cut(s) 225, 355, 595, 1045, 1127, 1333, 1381
Bst6I CTCTTC 3 cut(s) 1211, 1393, 1432
BstACI GRCGYC 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 1102
BstBI TTCGAA 1 cut(s) 647
BstC8I GCNNGC 4 cut(s) 340, 584, 685, 894
BstDEI CTNAG 8 cut(s) 30, 191, 443, 612, 657, 879, 888, 1019
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 5 cut(s) 253, 665, 731, 1204, 1282
BstMAI GTCTC 2 cut(s) 361, 411
BstMBI GATC 5 cut(s) 250, 662, 728, 1201, 1279
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 368, 1241, 1325
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 1 cut(s) 522
BstPAI GACNNNNGTC 1 cut(s) 287
BstSCI CCNGG 4 cut(s) 264, 284, 285, 568
BstSFI CTRYAG 3 cut(s) 429, 819, 1377
BstV1I GCAGC 4 cut(s) 640, 681, 833, 924
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
BsuRI GGCC 1 cut(s) 568
BtgZI GCGATG 2 cut(s) 136, 1179
BtsCI GGATG 1 cut(s) 315
BtsI GCAGTG 3 cut(s) 816, 942, 1323
BtsIMutI CAGTG 6 cut(s) 351, 816, 942, 1041, 1257, 1323
BveI ACCTGC 2 cut(s) 688, 1081
Cac8I GCNNGC 4 cut(s) 340, 584, 685, 894
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 4 cut(s) 262, 289, 423, 875
Cfr9I CCCGGG 1 cut(s) 285
Csp6I GTAC 2 cut(s) 217, 435
CviAII CATG 2 cut(s) 519, 562
CviQI GTAC 2 cut(s) 217, 435
DdeI CTNAG 8 cut(s) 30, 191, 443, 612, 657, 879, 888, 1019
DinI GGCGCC 1 cut(s) 177
DpnI GATC 5 cut(s) 252, 664, 730, 1203, 1281
DpnII GATC 5 cut(s) 250, 662, 728, 1201, 1279
Eam1104I CTCTTC 3 cut(s) 1211, 1393, 1432
EarI CTCTTC 3 cut(s) 1211, 1393, 1432
EciI GGCGGA 2 cut(s) 215, 1259
Eco147I AGGCCT 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 1025
Eco47I GGWCC 4 cut(s) 262, 289, 423, 875
Eco57I CTGAAG 1 cut(s) 401
Eco88I CYCGRG 2 cut(s) 285, 1181
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 1025
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 2 cut(s) 522, 565
FaqI GGGAC 3 cut(s) 130, 842, 1081
FatI CATG 2 cut(s) 518, 561
FauI CCCGC 1 cut(s) 125
FblI GTMKAC 3 cut(s) 81, 920, 1303
Fnu4HI GCNGC 4 cut(s) 654, 670, 822, 913
FokI GGATG 1 cut(s) 322
FriOI GRGCYC 1 cut(s) 1025
Fsp4HI GCNGC 4 cut(s) 654, 670, 822, 913
GlaI GCGC 1 cut(s) 177
GluI GCNGC 4 cut(s) 654, 670, 822, 913
GsuI CTGGAG 1 cut(s) 954
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 568
HapII CCGG 4 cut(s) 265, 286, 339, 368
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 2 cut(s) 522, 565
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 3 cut(s) 82, 543, 598
HindII GTYRAC 3 cut(s) 82, 543, 598
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 4 cut(s) 166, 1015, 1094, 1184
HpaII CCGG 4 cut(s) 265, 286, 339, 368
HphI GGTGA 8 cut(s) 46, 253, 401, 773, 780, 1062, 1170, 1283
Hpy166II GTNNAC 6 cut(s) 82, 543, 598, 781, 921, 1304
Hpy188I TCNGA 8 cut(s) 31, 112, 131, 381, 882, 1020, 1132, 1189
Hpy188III TCNNGA 5 cut(s) 170, 254, 726, 794, 971
Hpy8I GTNNAC 6 cut(s) 82, 543, 598, 781, 921, 1304
Hpy99I CGWCG 2 cut(s) 83, 1333
HpyCH4III ACNGT 7 cut(s) 225, 355, 595, 1045, 1127, 1333, 1381
HpyCH4IV ACGT 2 cut(s) 630, 1101
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 1241, 1325
HpyF3I CTNAG 8 cut(s) 30, 191, 443, 612, 657, 879, 888, 1019
HpySE526I ACGT 2 cut(s) 630, 1101
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 2 cut(s) 522, 565
HspAI GCGC 1 cut(s) 176
KasI GGCGCC 1 cut(s) 175
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Kzo9I GATC 5 cut(s) 250, 662, 728, 1201, 1279
LmnI GCTCC 4 cut(s) 232, 271, 538, 818
Lsp1109I GCAGC 4 cut(s) 640, 681, 833, 924
LweI GCATC 3 cut(s) 300, 1222, 1306
MaeII ACGT 2 cut(s) 630, 1101
MaeIII GTNAC 2 cut(s) 52, 1012
MalI GATC 5 cut(s) 252, 664, 730, 1203, 1281
MbiI CCGCTC 1 cut(s) 120
MboI GATC 5 cut(s) 250, 662, 728, 1201, 1279
MboII GAAGA 9 cut(s) 292, 930, 993, 1059, 1198, 1274, 1304, 1380, 1419
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 1 cut(s) 1025
Mly113I GGCGCC 1 cut(s) 176
MlyI GAGTC 3 cut(s) 1009, 1103, 1193
MmeI TCCRAC 2 cut(s) 576, 1007
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 622
MslI CAYNNNNRTG 1 cut(s) 1262
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 4 cut(s) 265, 286, 339, 368
MspR9I CCNGG 4 cut(s) 266, 286, 287, 570
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 3 cut(s) 368, 1241, 1325
NaeI GCCGGC 1 cut(s) 340
NarI GGCGCC 1 cut(s) 176
NciI CCSGG 3 cut(s) 266, 286, 287
NdeII GATC 5 cut(s) 250, 662, 728, 1201, 1279
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 2 cut(s) 522, 565
NlaIV GGNNCC 5 cut(s) 177, 290, 424, 804, 814
NmuCI GTSAC 2 cut(s) 52, 1012
NspI RCATGY 1 cut(s) 522
NspV TTCGAA 1 cut(s) 647
PaqCI CACCTGC 1 cut(s) 1081
PceI AGGCCT 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 655
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 622
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 4 cut(s) 655, 671, 823, 914
PleI GAGTC 3 cut(s) 1009, 1102, 1192
PluTI GGCGCC 1 cut(s) 179
PpsI GAGTC 3 cut(s) 1009, 1102, 1192
Ppu21I YACGTR 1 cut(s) 1102
PshAI GACNNNNGTC 1 cut(s) 287
PsiI TTATAA 1 cut(s) 960
Psp1406I AACGTT 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 5 cut(s) 177, 290, 424, 804, 814
PspPI GGNCC 4 cut(s) 262, 289, 423, 875
PsrI GAACNNNNNNTAC 2 cut(s) 1287, 1319
PstI CTGCAG 1 cut(s) 823
PsuI RGATCY 1 cut(s) 662
RsaI GTAC 2 cut(s) 218, 436
RsaNI GTAC 2 cut(s) 217, 435
RseI CAYNNNNRTG 1 cut(s) 1262
SalI GTCGAC 1 cut(s) 80
SatI GCNGC 4 cut(s) 654, 670, 822, 913
Sau3AI GATC 5 cut(s) 250, 662, 728, 1201, 1279
Sau96I GGNCC 4 cut(s) 262, 289, 423, 875
SchI GAGTC 3 cut(s) 1009, 1103, 1193
ScrFI CCNGG 4 cut(s) 266, 286, 287, 570
SduI GDGCHC 1 cut(s) 1025
SfaNI GCATC 3 cut(s) 300, 1222, 1306
SfcI CTRYAG 3 cut(s) 429, 819, 1377
SfoI GGCGCC 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 647
SinI GGWCC 4 cut(s) 262, 289, 423, 875
SmaI CCCGGG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 1262
SseBI AGGCCT 1 cut(s) 568
SsiI CCGC 5 cut(s) 118, 200, 426, 719, 1244
SspDI GGCGCC 1 cut(s) 175
StuI AGGCCT 1 cut(s) 568
StyD4I CCNGG 4 cut(s) 264, 284, 285, 568
TaaI ACNGT 7 cut(s) 225, 355, 595, 1045, 1127, 1333, 1381
TaiI ACGT 2 cut(s) 633, 1104
TaqI TCGA 5 cut(s) 81, 169, 647, 744, 1209
TaqII GACCGA 1 cut(s) 99
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 166
TscAI CASTG 6 cut(s) 358, 823, 949, 1048, 1264, 1330
TseFI GTSAC 2 cut(s) 52, 1012
TseI GCWGC 4 cut(s) 653, 669, 821, 912
Tsp45I GTSAC 2 cut(s) 52, 1012
TspDTI ATGAA 7 cut(s) 64, 338, 507, 891, 1164, 1274, 1389
TspGWI ACGGA 1 cut(s) 393
TspMI CCCGGG 1 cut(s) 285
TspRI CASTG 6 cut(s) 358, 823, 949, 1048, 1264, 1330
VpaK11BI GGWCC 4 cut(s) 262, 289, 423, 875
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 3 cut(s) 574, 898, 1274
XceI RCATGY 1 cut(s) 522
XmaI CCCGGG 1 cut(s) 285
XmiI GTMKAC 3 cut(s) 81, 920, 1303
XmnI GAANNNNTTC 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.