Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001619.1

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Forward (+)

3610 .. 5584

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggcaaagcaatctgaagccagaaatcagagaatctggccagggcacacctcatccagatcgccttcctcgtcaaccagtatctctccgataacaggctacatcgaagcctgcttcgtgtcaaagagcttgctgagtttgtctgagattttgatcaagtacatagcattgaaggagcagaaagtgttggaccatgagaaggttcaggtggagcaagagaaaaccagggttcagaagctgttgaatgggttgcagaactcgataaacgtttacaatgccagtggaaacccccaaatctccaaagtttcgaattcggcaccgaaacaaatgcacatggctcctcagtctcgcctatctcatggccggtctatacgccgcggttcggagcagttctggtccaattttggtgactcggatatcaagacatgggaacctaaaagagttgctgcattggttttctatgtttttattgccgcagtttcgtgccaaagaatatatgtagcaattcgagctcctatccaagatcgccagaggaaagagttgacggaggcttatatggaggcagtgattcctgagccatctccgagtaatgttagaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

200

Amino Acids

22.56

Weight (kDa)

9.84

Isoelectric Point (pI)

65.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccII	CGCG	1 cut(s)	378
AciI	CCGC	3 cut(s)	376, 378, 474
AclI	AACGTT	1 cut(s)	267
AcoI	YGGCCR	2 cut(s)	38, 361
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	95, 199, 382
AgsI	TTSAA	2 cut(s)	172, 244
AjnI	CCWGG	2 cut(s)	40, 224
AluBI	AGCT	3 cut(s)	129, 238, 512
AluI	AGCT	3 cut(s)	129, 238, 512
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	2 cut(s)	38, 361
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	190, 396
AsuHPI	GGTGA	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	190, 396
BaeGI	GKGCMC	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	514
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	1 cut(s)	586
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	2 cut(s)	42, 226
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	351
BisI	GCNGC	3 cut(s)	376, 447, 474
BlsI	GCNGC	3 cut(s)	377, 448, 475
Bme1390I	CCNGG	2 cut(s)	42, 226
Bme18I	GGWCC	2 cut(s)	190, 396
BmgT120I	GGNCC	2 cut(s)	190, 396
BmiI	GGNNCC	3 cut(s)	318, 339, 432
BmrFI	CCNGG	2 cut(s)	42, 226
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	41, 225, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 199, 382
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	78, 279
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	42, 226
BseDI	CCNNGG	3 cut(s)	41, 225, 376
BseGI	GGATG	1 cut(s)	53
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	3 cut(s)	95, 199, 382
BseMII	CTCAG	4 cut(s)	125, 135, 356, 564
BseNI	ACTGG	2 cut(s)	78, 279
BseRI	GAGGAG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	40, 363
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	3 cut(s)	95, 199, 382
BsmAI	GTCTC	1 cut(s)	351
BsnI	GGCC	2 cut(s)	40, 363
Bsp119I	TTCGAA	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	48, 514
Bsp143I	GATC	3 cut(s)	59, 153, 523
BspACI	CCGC	3 cut(s)	376, 378, 474
BspANI	GGCC	2 cut(s)	40, 363
BspCNI	CTCAG	4 cut(s)	126, 136, 355, 565
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	318, 339, 432
BspT104I	TTCGAA	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	78, 279
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	3 cut(s)	41, 225, 376
BssMI	GATC	3 cut(s)	59, 153, 523
Bst2UI	CCWGG	2 cut(s)	42, 226
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	112, 131
BstDEI	CTNAG	4 cut(s)	134, 144, 342, 573
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	62, 156, 526
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	3 cut(s)	59, 153, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	2 cut(s)	42, 226
BstSCI	CCNGG	2 cut(s)	40, 224
BstSLI	GKGCMC	1 cut(s)	48
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	40, 363
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	286, 570
Cac8I	GCNNGC	2 cut(s)	112, 131
CaiI	CAGNNNCTG	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	2 cut(s)	190, 396
Cfr42I	CCGCGG	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	4 cut(s)	194, 334, 359, 426
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	134, 144, 342, 573
DpnI	GATC	3 cut(s)	61, 155, 525
DpnII	GATC	3 cut(s)	59, 153, 523
EaeI	YGGCCR	2 cut(s)	38, 361
Ecl136II	GAGCTC	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	514
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	190, 396
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	40, 224
EcoRV	GATATC	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	514
FaeI	CATG	4 cut(s)	197, 337, 362, 429
FatI	CATG	4 cut(s)	193, 333, 358, 425
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	376, 447, 474
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	3 cut(s)	376, 447, 474
GluI	GCNGC	3 cut(s)	376, 447, 474
HaeIII	GGCC	2 cut(s)	40, 363
HapII	CCGG	1 cut(s)	364
Hin1II	CATG	4 cut(s)	197, 337, 362, 429
HincII	GTYRAC	2 cut(s)	75, 543
HindII	GTYRAC	2 cut(s)	75, 543
HinfI	GANTC	3 cut(s)	33, 410, 568
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	3 cut(s)	75, 271, 543
Hpy188I	TCNGA	8 cut(s)	16, 30, 90, 145, 234, 385, 415, 585
Hpy188III	TCNNGA	3 cut(s)	57, 421, 572
Hpy8I	GTNNAC	3 cut(s)	75, 271, 543
HpyAV	CCTTC	3 cut(s)	75, 166, 193
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	253, 331, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	4 cut(s)	134, 144, 342, 573
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	197, 337, 362, 429
Ksp22I	TGATCA	1 cut(s)	153
KspI	CCGCGG	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	59, 153, 523
LmnI	GCTCC	5 cut(s)	175, 211, 343, 385, 517
Lsp1109I	GCAGC	1 cut(s)	433
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	3 cut(s)	61, 155, 525
MboI	GATC	3 cut(s)	59, 153, 523
MhlI	GDGCHC	2 cut(s)	48, 514
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	3 cut(s)	310, 400, 504
MluNI	TGGCCA	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	6 cut(s)	61, 79, 351, 525, 541, 553
Mox20I	TGGCCA	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	40
Msp20I	TGGCCA	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	2 cut(s)	42, 226
MvaI	CCWGG	2 cut(s)	42, 226
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	3 cut(s)	59, 153, 523
NlaIII	CATG	4 cut(s)	197, 337, 362, 429
NlaIV	GGNNCC	3 cut(s)	318, 339, 432
NmuCI	GTSAC	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	33, 568
PkrI	GCNGC	3 cut(s)	377, 448, 475
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	514
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	40, 224
PspGI	CCWGG	2 cut(s)	40, 224
PspN4I	GGNNCC	3 cut(s)	318, 339, 432
PspPI	GGNCC	2 cut(s)	190, 396
PstNI	CAGNNNCTG	1 cut(s)	238
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	514
SacII	CCGCGG	1 cut(s)	379
SatI	GCNGC	3 cut(s)	376, 447, 474
Sau3AI	GATC	3 cut(s)	59, 153, 523
Sau96I	GGNCC	2 cut(s)	190, 396
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	42, 226
SduI	GDGCHC	2 cut(s)	48, 514
SetI	ASST	8 cut(s)	53, 131, 204, 210, 240, 270, 436, 514
Sfr303I	CCGCGG	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	308
SgrBI	CCGCGG	1 cut(s)	379
SinI	GGWCC	2 cut(s)	190, 396
Sse9I	AATT	3 cut(s)	310, 400, 504
SsiI	CCGC	3 cut(s)	376, 378, 474
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	2 cut(s)	40, 224
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	4 cut(s)	105, 260, 308, 508
TasI	AATT	3 cut(s)	310, 400, 504
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	2 cut(s)	378, 476
TfiI	GAWTC	2 cut(s)	33, 568
TscAI	CASTG	2 cut(s)	286, 570
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	2 cut(s)	286, 570
VpaK11BI	GGWCC	2 cut(s)	190, 396
XapI	RAATTY	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.