Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Forward (+)

48191192 .. 48194379

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGCAAGAGAAGACCAGGGTTCAGAAGTTGTTGAATGGGTTGCAGAACTCAATAAACGTTTACAATGCCAGTGGAAACCCCCAAATCTCCAAAGTTTCGAATGCAGCACCGAAACAAATGCACATGGCTCCTCAGTCTCGCCTATCTAATGGGTCTTCTACAGTTGCTAAGAGTGTTGCTCTATCACCTACCAATGGAGTTAACTATTATTCCTTAGTTGGCCTGCCAAACCATGAATTTACTAATACAAAACATTGTGATTTACTATCCATTGCTCAGGCTCCTTGTTTTGTATTTGTGGACGAGATTGATGCTATTGCTGGAAGGCATGCAAGACATGATCCTAGAAGAATAGCAACATTTGAGGCTTTGATTGCACAGCTCGATGGGGAGAAGGAAAAAACTGGTGTTGATCGCTTCTCTCTCAGACAAGCTGTCATATTCATCTGTGCTACCAACATGCCAGATGAATTAGACCTTGAATTTATTCAATCTGGACGTATTGACCATCGACTGTACATTGGTTTACCTGATGCAAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

183

Amino Acids

20.1

Weight (kDa)

7.01

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	90 - 176	5.8e-14	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	60
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	2 cut(s)	239, 485
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	3 cut(s)	37, 485, 494
AhdI	GACNNNNNGTC	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	2 cut(s)	385, 437
AluI	AGCT	2 cut(s)	385, 437
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	239, 485
Asp700I	GAANNNNTTC	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	180
AsuII	TTCGAA	1 cut(s)	101
BbsI	GAAGAC	2 cut(s)	20, 150
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	2 cut(s)	383, 519
BcgI	CGANNNNNNTGC	4 cut(s)	103, 137, 296, 330
BciT130I	CCWGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	19
BmeRI	GACNNNNNGTC	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	132, 285
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	304, 526
BpiI	GAAGAC	2 cut(s)	20, 150
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	72, 412
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	3 cut(s)	149, 293, 442
BseNI	ACTGG	2 cut(s)	72, 412
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	119
BshFI	GGCC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	225
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	343, 415
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	3 cut(s)	148, 292, 441
BspLI	GGNNCC	2 cut(s)	132, 285
BspPI	GGATC	1 cut(s)	338
BspT104I	TTCGAA	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	2 cut(s)	72, 412
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	343, 415
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	2 cut(s)	166, 519
BstAUI	TGTACA	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	227, 333
BstDEI	CTNAG	5 cut(s)	135, 171, 217, 279, 428
BstKTI	GATC	2 cut(s)	346, 418
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	343, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	2 cut(s)	335, 466
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	2 cut(s)	20, 150
BsuRI	GGCC	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	227, 333
Csp6I	GTAC	1 cut(s)	520
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	5 cut(s)	127, 236, 332, 341, 463
CviJI	RGCY	6 cut(s)	131, 225, 284, 371, 385, 437
CviKI_1	RGCY	6 cut(s)	131, 225, 284, 371, 385, 437
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	5 cut(s)	135, 171, 217, 279, 428
DpnI	GATC	2 cut(s)	345, 417
DpnII	GATC	2 cut(s)	343, 415
DriI	GACNNNNNGTC	1 cut(s)	437
Eam1105I	GACNNNNNGTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	17
FaeI	CATG	5 cut(s)	130, 239, 335, 344, 466
FaiI	YATR	6 cut(s)	128, 237, 333, 342, 443, 464
FatI	CATG	5 cut(s)	126, 235, 331, 340, 462
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	5 cut(s)	130, 239, 335, 344, 466
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HpaI	GTTAAC	1 cut(s)	205
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	4 cut(s)	64, 205, 304, 530
Hpy188I	TCNGA	2 cut(s)	27, 431
Hpy188III	TCNNGA	1 cut(s)	498
Hpy8I	GTNNAC	4 cut(s)	64, 205, 304, 530
HpyAV	CCTTC	2 cut(s)	321, 391
HpyCH4III	ACNGT	2 cut(s)	166, 519
HpyCH4IV	ACGT	2 cut(s)	60, 502
HpyCH4V	TGCA	6 cut(s)	46, 107, 124, 335, 380, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	5 cut(s)	135, 171, 217, 279, 428
HpySE526I	ACGT	2 cut(s)	60, 502
Hsp92II	CATG	5 cut(s)	130, 239, 335, 344, 466
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	343, 415
LmnI	GCTCC	3 cut(s)	4, 136, 289
LpnPI	CCDG	9 cut(s)	4, 31, 85, 239, 266, 309, 393, 480, 483
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	2 cut(s)	304, 526
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	2 cut(s)	60, 502
MalI	GATC	2 cut(s)	345, 417
MboI	GATC	2 cut(s)	343, 415
MboII	GAAGA	3 cut(s)	25, 150, 363
MluCI	AATT	3 cut(s)	239, 473, 485
MnlI	CCTC	2 cut(s)	144, 361
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	2 cut(s)	343, 415
NlaIII	CATG	5 cut(s)	130, 239, 335, 344, 466
NlaIV	GGNNCC	2 cut(s)	132, 285
NspI	RCATGY	2 cut(s)	335, 466
NspV	TTCGAA	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	335
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	489
PkrI	GCNGC	1 cut(s)	109
Psp1406I	AACGTT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	132, 285
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	343, 415
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	7 cut(s)	63, 193, 387, 439, 483, 505, 535
SfaNI	GCATC	2 cut(s)	304, 526
SfcI	CTRYAG	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	101
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	3 cut(s)	239, 473, 485
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	166, 519
TaiI	ACGT	2 cut(s)	63, 505
TaqI	TCGA	3 cut(s)	101, 387, 514
TasI	AATT	3 cut(s)	239, 473, 485
TatI	WGTACW	1 cut(s)	519
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	252, 436, 486
TspRI	CASTG	1 cut(s)	79
XapI	RAATTY	2 cut(s)	239, 485
XceI	RCATGY	2 cut(s)	335, 466
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.