MD12G1157700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
23807406 .. 23810077
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1157700.v1.1.491

Sequence Viewer

Length: 1440 bp
ATGGGGAAGCAGTCCAAAGGCAAGAAGTCTGAGAATTTGGGTAAGGGAAAAGTCACCCCCGTCCAAATCGCCTTCATCGTCGACCGATACCTCTGCGACAACAACTACTCGGAAACCCGCTCTCTTTTCAGAACCGAAGCTTCGTCCCTCATCGCCAAATCGCCGATTCGAGAGGCACCTAAGAGTTTGCTGAGCTTGGCGGAGATTTTGGACGAGTACATACTGTTGAAGGAGCAGAAGGTGATTTTGGACCAGGAGAAGGTCCGGGTGGAGCAGGAGAAGACCCGGGTCCAAACCCTGCTGAAGGGGATGCAAAGCGTGATGAACACTTACAATGCCGGCGGAAGTCCCGCAGTCTCTGCACCTCCTGCTGTGGCTCCGAAGCCGATGCTTATGGCTACTCCGTCTCACCCGTCTAATGGGTCCGCTGCAGTTGCTCCTGTGTCAACACCTTCCAACCCCAACATGAGGCCTGGGAATTTCTGCTCGCCAATTACAGTTGACCCACCTACAACTAAGAGAAAGAGTTCTAAGGTTCCCGTGGATGGTTTGAATGCTGCTAAGAGATCTTGCAGCAAATTACCTGCTGGCAAGAGCAATATGCACAACAAAGGAGAACAAGCGGTTTCAGGATCAGGTGATGCACTCGATAATAAAAAATCTGCCCAATCCTCTTTGGCTGTTCACCCATCACCTCACGATTTGGTTCCCAATGGCTCCACCGTGGCTAAATGCTTGTTCAACCAGCCATCATTTTCTGTCCCAACTAATAACTCTGGTCCTCAGACACCTCAGCGAGCAAATTCAATTCAAGTCAGCAAGTCTACACCTTTTGAGATTTCTTCCACTGCTACTTGCAGTTATAATTCTCCTCCAGATGTAAATCCAACTTGCACCATTTTTTCTTCAAAGAGAGTGACTCTGAGCCCAAACAAAGCTTGCTACACTGTGGAAACAAACCATTGCATTTCTTCACCTGCCAAGACAAGTAAGAGGGAGTCCCATGTAAAGGGGAGGCTCAATTTTGACTGTTCTGATGTGCCAATGGGCTTGGAGAAACCATCTGGCGATGAGATTTCATCACCTGAGTCTGAAAGGGAAGTTGATCTCTTTGACATTGATTTGACGAACTTTGATGCCATTGGGGCGGATTTCTCCTTCACTGAAATGTTAGGTGAATTTGATCTTCATTGTGAAGAACTTGGTCTACCAAACTTTGATGCTTCCACTGTGACGGTTTCGGGGTCATCTTATGAATCTGCGGATGGTAACGTGGGGGCCAATCAAGTTTTGTCAGAATTTACATCAACTGTGACAGAAGTACTATCAGAGAAGGACATGAATGTGCAAGGATCTGATTCCTTGACTGCGATGAAGTCTGTGACAAAATGTATTAGGATTATAAGCCCTGTGAAAAATCGCGGAAGCTCTCAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

480

Amino Acids

51.2

Weight (kDa)

7.03

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 864, 1403
AarI CACCTGC 1 cut(s) 985
Acc36I ACCTGC 2 cut(s) 592, 985
AccB1I GGYRCC 1 cut(s) 175
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 3 cut(s) 81, 824, 1207
AccII CGCG 1 cut(s) 1422
AciI CCGC 9 cut(s) 118, 200, 342, 351, 426, 623, 1148, 1262, 1422
AclWI GGATC 2 cut(s) 640, 1360
AcsI RAATTY 5 cut(s) 34, 478, 802, 1178, 1298
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 2 cut(s) 218, 1323
AfiI CCNNNNNNNGG 6 cut(s) 259, 304, 419, 468, 545, 1009
AgsI TTSAA 6 cut(s) 229, 553, 742, 807, 812, 909
AjnI CCWGG 2 cut(s) 252, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 4 cut(s) 140, 195, 938, 1428
AluI AGCT 4 cut(s) 140, 195, 938, 1428
Alw26I GTCTC 2 cut(s) 361, 411
AlwI GGATC 2 cut(s) 640, 1360
AlwNI CAGNNNCTG 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 2 cut(s) 470, 1278
ApeKI GCWGC 3 cut(s) 428, 557, 573
ApoI RAATTY 5 cut(s) 34, 478, 802, 1178, 1298
Asp700I GAANNNNTTC 1 cut(s) 526
AspS9I GGNCC 6 cut(s) 250, 262, 289, 423, 779, 1278
AsuC2I CCSGG 3 cut(s) 266, 286, 287
AsuHPI GGTGA 9 cut(s) 46, 253, 401, 650, 677, 684, 966, 1074, 1187
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 5 cut(s) 250, 262, 289, 423, 779
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 929
BbsI GAAGAC 1 cut(s) 287
BbvCI CCTCAGC 1 cut(s) 792
BbvI GCAGC 3 cut(s) 415, 544, 585
BccI CCATC 5 cut(s) 539, 697, 757, 1069, 1259
BcgI CGANNNNNNTGC 4 cut(s) 75, 109, 370, 404
BciT130I CCWGG 2 cut(s) 254, 474
BcnI CCSGG 3 cut(s) 266, 286, 287
BcoDI GTCTC 2 cut(s) 361, 411
BfmI CTRYAG 1 cut(s) 429
BfuAI ACCTGC 2 cut(s) 592, 985
BglI GCCNNNNNGGC 1 cut(s) 1145
BglII AGATCT 1 cut(s) 566
BisI GCNGC 3 cut(s) 429, 558, 574
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 3 cut(s) 430, 559, 575
BmcAI AGTACT 1 cut(s) 1323
Bme1390I CCNGG 5 cut(s) 254, 266, 286, 287, 474
Bme18I GGWCC 5 cut(s) 250, 262, 289, 423, 779
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 6 cut(s) 250, 262, 289, 423, 779, 1278
BmiI GGNNCC 8 cut(s) 177, 290, 378, 424, 537, 708, 718, 1279
BmrFI CCNGG 5 cut(s) 254, 266, 286, 287, 474
BmsI GCATC 5 cut(s) 300, 378, 631, 1126, 1210
BoxI GACNNNNGTC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 904, 936
BpmI CTGGAG 1 cut(s) 858
Bpu10I CCTNAGC 1 cut(s) 792
Bpu1102I GCTNAGC 1 cut(s) 191
BpuMI CCSGG 3 cut(s) 266, 286, 287
BsaBI GATNNNNATC 1 cut(s) 882
BsaJI CCNNGG 4 cut(s) 285, 473, 540, 723
Bsc4I CCNNNNNNNGG 6 cut(s) 259, 304, 419, 468, 545, 1009
Bse118I RCCGGY 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 961
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 2 cut(s) 254, 474
BseDI CCNNGG 4 cut(s) 285, 473, 540, 723
BseGI GGATG 3 cut(s) 315, 550, 1270
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 6 cut(s) 259, 304, 419, 468, 545, 1009
BseMI GCAATG 1 cut(s) 961
BseMII CTCAG 6 cut(s) 21, 182, 797, 806, 914, 1077
BseRI GAGGAG 1 cut(s) 861
BseXI GCAGC 3 cut(s) 415, 544, 585
BsgI GTGCAG 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 1422
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 2 cut(s) 472, 1280
BshNI GGYRCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 3 cut(s) 265, 286, 339
BslFI GGGAC 4 cut(s) 130, 333, 746, 985
BslI CCNNNNNNNGG 6 cut(s) 259, 304, 419, 468, 545, 1009
BsmAI GTCTC 2 cut(s) 361, 411
BsmBI CGTCTC 1 cut(s) 411
BsmFI GGGAC 4 cut(s) 130, 333, 746, 985
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 2 cut(s) 472, 1280
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 929
Bsp143I GATC 5 cut(s) 566, 632, 1105, 1183, 1352
Bsp1720I GCTNAGC 1 cut(s) 191
BspACI CCGC 9 cut(s) 118, 200, 342, 351, 426, 623, 1148, 1262, 1422
BspANI GGCC 2 cut(s) 472, 1280
BspCNI CTCAG 6 cut(s) 22, 183, 796, 805, 915, 1078
BspFNI CGCG 1 cut(s) 1422
BspLI GGNNCC 8 cut(s) 177, 290, 378, 424, 537, 708, 718, 1279
BspMAI CTGCAG 1 cut(s) 433
BspMI ACCTGC 2 cut(s) 592, 985
BspPI GGATC 2 cut(s) 640, 1360
BspT107I GGYRCC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 961
BsrFI RCCGGY 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 4 cut(s) 285, 473, 540, 723
BssMI GATC 5 cut(s) 566, 632, 1105, 1183, 1352
Bst2UI CCWGG 2 cut(s) 254, 474
Bst4CI ACNGT 8 cut(s) 225, 499, 724, 949, 1031, 1231, 1237, 1312
BstAPI GCANNNNNTGC 2 cut(s) 359, 368
BstC8I GCNNGC 5 cut(s) 340, 488, 589, 798, 940
BstDSI CCRYGG 2 cut(s) 540, 723
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 3 cut(s) 315, 550, 1270
BstFNI CGCG 1 cut(s) 1422
BstKTI GATC 5 cut(s) 569, 635, 1108, 1186, 1355
BstMAI GTCTC 2 cut(s) 361, 411
BstMBI GATC 5 cut(s) 566, 632, 1105, 1183, 1352
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 4 cut(s) 359, 368, 434, 1145
BstNI CCWGG 2 cut(s) 254, 474
BstPAI GACNNNNGTC 1 cut(s) 287
BstSCI CCNGG 5 cut(s) 252, 264, 284, 285, 472
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 1422
BstV1I GCAGC 3 cut(s) 415, 544, 585
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 2 cut(s) 566, 1352
BstYI RGATCY 2 cut(s) 566, 1352
BsuRI GGCC 2 cut(s) 472, 1280
BtgI CCRYGG 2 cut(s) 540, 723
BtgZI GCGATG 3 cut(s) 136, 1083, 1385
BtsCI GGATG 3 cut(s) 315, 550, 1270
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 4 cut(s) 846, 945, 1161, 1227
BveI ACCTGC 2 cut(s) 592, 985
Cac8I GCNNGC 5 cut(s) 340, 488, 589, 798, 940
CaiI CAGNNNCTG 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 6 cut(s) 250, 262, 289, 423, 779, 1278
Cfr9I CCCGGG 1 cut(s) 285
Csp6I GTAC 2 cut(s) 217, 1322
CviAII CATG 3 cut(s) 466, 1004, 1339
CviQI GTAC 2 cut(s) 217, 1322
DpnI GATC 5 cut(s) 568, 634, 1107, 1185, 1354
DpnII GATC 5 cut(s) 566, 632, 1105, 1183, 1352
EciI GGCGGA 3 cut(s) 215, 357, 1163
Eco147I AGGCCT 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 929
Eco47I GGWCC 5 cut(s) 250, 262, 289, 423, 779
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 252, 472
EcoT38I GRGCYC 1 cut(s) 929
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 3 cut(s) 469, 1007, 1342
FaiI YATR 9 cut(s) 221, 395, 467, 602, 864, 1005, 1254, 1340, 1403
FaqI GGGAC 4 cut(s) 130, 333, 746, 985
FatI CATG 3 cut(s) 465, 1003, 1338
FauI CCCGC 2 cut(s) 125, 358
FblI GTMKAC 3 cut(s) 81, 824, 1207
Fnu4HI GCNGC 3 cut(s) 429, 558, 574
FokI GGATG 3 cut(s) 322, 557, 1277
FriOI GRGCYC 1 cut(s) 929
Fsp4HI GCNGC 3 cut(s) 429, 558, 574
GluI GCNGC 3 cut(s) 429, 558, 574
GsuI CTGGAG 1 cut(s) 858
HaeIII GGCC 2 cut(s) 472, 1280
HapII CCGG 3 cut(s) 265, 286, 339
Hin1II CATG 3 cut(s) 469, 1007, 1342
HincII GTYRAC 3 cut(s) 82, 447, 502
HindII GTYRAC 3 cut(s) 82, 447, 502
HindIII AAGCTT 2 cut(s) 138, 936
HinfI GANTC 6 cut(s) 166, 919, 998, 1088, 1256, 1358
HpaII CCGG 3 cut(s) 265, 286, 339
HphI GGTGA 9 cut(s) 46, 253, 401, 650, 677, 684, 966, 1074, 1187
Hpy166II GTNNAC 6 cut(s) 82, 447, 502, 685, 825, 1208
Hpy188III TCNNGA 5 cut(s) 170, 630, 698, 875, 1433
Hpy8I GTNNAC 6 cut(s) 82, 447, 502, 685, 825, 1208
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 8 cut(s) 82, 223, 232, 253, 298, 462, 1168, 1327
HpyCH4III ACNGT 8 cut(s) 225, 499, 724, 949, 1031, 1231, 1237, 1312
HpyCH4IV ACGT 1 cut(s) 1272
HpyF10VI GCNNNNNNNGC 4 cut(s) 359, 368, 434, 1145
HpySE526I ACGT 1 cut(s) 1272
Hsp92II CATG 3 cut(s) 469, 1007, 1342
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Kzo9I GATC 5 cut(s) 566, 632, 1105, 1183, 1352
LmnI GCTCC 5 cut(s) 232, 271, 382, 442, 722
Lsp1109I GCAGC 3 cut(s) 415, 544, 585
LweI GCATC 5 cut(s) 300, 378, 631, 1126, 1210
MaeII ACGT 1 cut(s) 1272
MaeIII GTNAC 6 cut(s) 52, 916, 1231, 1268, 1312, 1381
MalI GATC 5 cut(s) 568, 634, 1107, 1185, 1354
MbiI CCGCTC 1 cut(s) 120
MboI GATC 5 cut(s) 566, 632, 1105, 1183, 1352
MboII GAAGA 6 cut(s) 292, 834, 897, 963, 1178, 1208
MflI RGATCY 2 cut(s) 566, 1352
MhlI GDGCHC 1 cut(s) 929
MlyI GAGTC 3 cut(s) 913, 1007, 1097
MmeI TCCRAC 2 cut(s) 480, 911
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 526
MslI CAYNNNNRTG 2 cut(s) 1166, 1343
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 3 cut(s) 265, 286, 339
MspR9I CCNGG 5 cut(s) 254, 266, 286, 287, 474
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 2 cut(s) 254, 474
MvnI CGCG 1 cut(s) 1422
MwoI GCNNNNNNNGC 4 cut(s) 359, 368, 434, 1145
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 3 cut(s) 266, 286, 287
NdeII GATC 5 cut(s) 566, 632, 1105, 1183, 1352
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 3 cut(s) 469, 1007, 1342
NlaIV GGNNCC 8 cut(s) 177, 290, 378, 424, 537, 708, 718, 1279
NmuCI GTSAC 5 cut(s) 52, 916, 1231, 1312, 1381
PaqCI CACCTGC 1 cut(s) 985
PceI AGGCCT 1 cut(s) 472
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 559
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 3 cut(s) 166, 1256, 1358
PkrI GCNGC 3 cut(s) 430, 559, 575
PleI GAGTC 3 cut(s) 913, 1006, 1096
PpsI GAGTC 3 cut(s) 913, 1006, 1096
PshAI GACNNNNGTC 1 cut(s) 287
PsiI TTATAA 2 cut(s) 864, 1403
Psp6I CCWGG 2 cut(s) 252, 472
PspGI CCWGG 2 cut(s) 252, 472
PspN4I GGNNCC 8 cut(s) 177, 290, 378, 424, 537, 708, 718, 1279
PspPI GGNCC 6 cut(s) 250, 262, 289, 423, 779, 1278
PsrI GAACNNNNNNTAC 2 cut(s) 1191, 1223
PstI CTGCAG 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 2 cut(s) 566, 1352
RsaI GTAC 2 cut(s) 218, 1323
RsaNI GTAC 2 cut(s) 217, 1322
RseI CAYNNNNRTG 2 cut(s) 1166, 1343
SalI GTCGAC 1 cut(s) 80
SatI GCNGC 3 cut(s) 429, 558, 574
Sau3AI GATC 5 cut(s) 566, 632, 1105, 1183, 1352
Sau96I GGNCC 6 cut(s) 250, 262, 289, 423, 779, 1278
ScaI AGTACT 1 cut(s) 1323
SchI GAGTC 3 cut(s) 913, 1007, 1097
ScrFI CCNGG 5 cut(s) 254, 266, 286, 287, 474
SduI GDGCHC 1 cut(s) 929
SfaNI GCATC 5 cut(s) 300, 378, 631, 1126, 1210
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 5 cut(s) 250, 262, 289, 423, 779
SmaI CCCGGG 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 1166, 1343
SseBI AGGCCT 1 cut(s) 472
SsiI CCGC 9 cut(s) 118, 200, 342, 351, 426, 623, 1148, 1262, 1422
StuI AGGCCT 1 cut(s) 472
StyD4I CCNGG 5 cut(s) 252, 264, 284, 285, 472
TaaI ACNGT 8 cut(s) 225, 499, 724, 949, 1031, 1231, 1237, 1312
TaiI ACGT 1 cut(s) 1275
TaqI TCGA 3 cut(s) 81, 169, 648
TaqII GACCGA 1 cut(s) 99
TatI WGTACW 2 cut(s) 216, 1321
TfiI GAWTC 3 cut(s) 166, 1256, 1358
TscAI CASTG 4 cut(s) 853, 952, 1168, 1234
TseFI GTSAC 5 cut(s) 52, 916, 1231, 1312, 1381
TseI GCWGC 3 cut(s) 428, 557, 573
Tsp45I GTSAC 5 cut(s) 52, 916, 1231, 1312, 1381
TspDTI ATGAA 7 cut(s) 64, 338, 1068, 1178, 1269, 1355, 1388
TspGWI ACGGA 1 cut(s) 393
TspMI CCCGGG 1 cut(s) 285
TspRI CASTG 4 cut(s) 853, 952, 1168, 1234
VpaK11BI GGWCC 5 cut(s) 250, 262, 289, 423, 779
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 5 cut(s) 34, 478, 802, 1178, 1298
XmaI CCCGGG 1 cut(s) 285
XmiI GTMKAC 3 cut(s) 81, 824, 1207
XmnI GAANNNNTTC 1 cut(s) 526
ZrmI AGTACT 1 cut(s) 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.