Rh1DG068100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002081
Physical Location & Seq
Reverse (-)
12030741 .. 12037848
7108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG068100.1

Sequence Viewer

Length: 360 bp
ATGCCAGAGAAGTTATCCGTCAATGTCAGGCACCTTACGTACACTTCGATCTGTCTTGGGATGCCAGTGAAGGTGTCAAAGAGCTTGCTGAGTTTGTCTGAGATTCTGATCAAGTACATAGCATTGAAGGAGCAGAAAGTGTTGGACCATGAGAAGGTTCAAGTGGAGCAAGAGAAGTCCAGGGTTCAGAAGTTGTTGAATGGGTTGCAGAACTCAATAAACATTTACAATGCCAGTGGAAACCCCCAAATCTCCAAAGTTTCGAATGCGGCACCGAAACAAATGCACATGGCTCCTCAGTTTCGCCTATCTAATGGGTCTTCTACAGGTGCAATCCTAACCCCATTTGCTTGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.13

Weight (kDa)

9.65

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 30, 271
AciI CCGC 1 cut(s) 269
AfaI GTAC 2 cut(s) 41, 116
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 127, 161, 199
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 145
BanI GGYRCC 2 cut(s) 30, 271
BbsI GAAGAC 1 cut(s) 312
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 181
BclI TGATCA 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 3 cut(s) 32, 273, 294
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 65, 234
Bse8I GATNNNNATC 1 cut(s) 107
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 66
BseJI GATNNNNATC 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 3 cut(s) 80, 90, 311
BseNI ACTGG 2 cut(s) 65, 234
BseRI GAGGAG 1 cut(s) 285
BshNI GGYRCC 2 cut(s) 30, 271
BslI CCNNNNNNNGG 1 cut(s) 154
BsmI GAATGC 1 cut(s) 271
Bsp119I TTCGAA 1 cut(s) 263
Bsp143I GATC 2 cut(s) 48, 108
BspACI CCGC 1 cut(s) 269
BspCNI CTCAG 3 cut(s) 81, 91, 310
BspLI GGNNCC 3 cut(s) 32, 273, 294
BspT104I TTCGAA 1 cut(s) 263
BspT107I GGYRCC 2 cut(s) 30, 271
BsrI ACTGG 2 cut(s) 65, 234
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 48, 108
Bst2UI CCWGG 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 3 cut(s) 89, 99, 297
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 2 cut(s) 51, 111
BstMBI GATC 2 cut(s) 48, 108
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 324
BstSNI TACGTA 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 72, 241
Cac8I GCNNGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 40, 115
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 2 cut(s) 149, 289
CviJI RGCY 2 cut(s) 84, 293
CviKI_1 RGCY 2 cut(s) 84, 293
CviQI GTAC 2 cut(s) 40, 115
DdeI CTNAG 3 cut(s) 89, 99, 297
DpnI GATC 2 cut(s) 50, 110
DpnII GATC 2 cut(s) 48, 108
Eco105I TACGTA 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 152, 292
FaiI YATR 3 cut(s) 119, 150, 290
FatI CATG 2 cut(s) 148, 288
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 270
Hin1II CATG 2 cut(s) 152, 292
HinfI GANTC 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 3 cut(s) 100, 108, 189
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 3 cut(s) 64, 121, 148
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 208, 286, 332
HpyF3I CTNAG 3 cut(s) 89, 99, 297
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 152, 292
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 48, 108
LmnI GCTCC 3 cut(s) 130, 166, 298
LpnPI CCDG 7 cut(s) 13, 18, 78, 166, 193, 247, 312
LweI GCATC 1 cut(s) 51
MaeII ACGT 1 cut(s) 38
MalI GATC 2 cut(s) 50, 110
MboI GATC 2 cut(s) 48, 108
MboII GAAGA 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 181
NdeII GATC 2 cut(s) 48, 108
NlaIII CATG 2 cut(s) 152, 292
NlaIV GGNNCC 3 cut(s) 32, 273, 294
NspV TTCGAA 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 3 cut(s) 32, 273, 294
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 2 cut(s) 41, 116
RsaNI GTAC 2 cut(s) 40, 115
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 48, 108
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 181
SetI ASST 6 cut(s) 36, 41, 75, 86, 159, 331
SfaNI GCATC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 263
SinI GGWCC 1 cut(s) 145
SnaBI TACGTA 1 cut(s) 39
SsiI CCGC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 179
TaiI ACGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 47, 263
TatI WGTACW 1 cut(s) 114
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 103
TscAI CASTG 2 cut(s) 72, 241
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 2 cut(s) 72, 241
VpaK11BI GGWCC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.