Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Reverse (-)

20018656 .. 20020926

Gene Structure 2271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGGGAAATCGAGCAGATCTAAAGGATCGAATCTCATCGGCAAAGGTGAAGTTACCCCAACGCAAGTTGCTTTTATCGTCGATCGCTATCTCCACGACAATCGATTCTCAGAAACTCGAGCCCTCTTTAGATCTGAAGCTTCTTCTCTCATCTCTGATTCCCCAATTCGCAATGTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCTCTAAAGAAGCAGAAAGTGAGTCTGGATCAAGAGAAACTGAAATTGGATCAAGAGAAAATTAGGGTTCAAAATCTGTTGCAGGGGATGGAAAATGTGATGAATACTTACAACGCTAGCCTCACCGCTCCTCCTCCGGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAACAAAAGAGTAGATTTTGGGAATTTTTCCACACCTTCGACGAGTCAGTCTATAACTGGGAAACGAAAAGGTCCTGAAGTTTCTGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGAAACACTAGCAGTGGCTAAAAACTCTGCAAGTAATGAGTTGATTGGTAATGGGTCAAGTGTGGTGAAGTGTTTGTTCAATAAGGCTGATTCGTCTGTTCCTACTAGTTCAACATGCTTTAGGACACCACAAAAACATGCTTCTTCTGGGAGTGATAAGTCCAACAGTTCCCAGAAAGAAGTTACTCCTACAAATACAAACTGCACAATTGTTACAAAGGAGAGATTCACAATCAGCCCTCTCAAGCAAATTACTTCTTATTCAGTGGAAAGAAGCCATCTTATTTCTTTTTCTTCACCGGTCAAGTCTAACCTGAAGATGTCAAATAAGAGAGACCATGTGAAAGGAAAGCTCAACTTTGATGACACTGACACAGAAACGTGCTTAGAGGCACCTGCCACTGCAGATTTAGTTTCAACTTCTCCATCTGGGTCTGAGCCAGAAGTTGATTTGTTTGACATGGACTTTTCTAATCTGGATTTCTCGGAGCTACTAGTTGATTTCGATCTTGGTTGTGAAGGAAGTGCAAATCATTGCTTGTCACTGACCCCAAATCAACCCACTCAAACTGTTTCAGGGTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAATTTCAAGATGTATTGATCCTCTCTCTAACTCGAGCCATTCTTCTCTTAACACAGACAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

456

Amino Acids

49.29

Weight (kDa)

7.07

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1045
AasI	GACNNNNNNGTC	1 cut(s)	505
Acc36I	ACCTGC	1 cut(s)	1045
AccB1I	GGYRCC	1 cut(s)	1033
AccBSI	CCGCTC	1 cut(s)	350
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	5 cut(s)	34, 258, 279, 584, 1316
AcsI	RAATTY	2 cut(s)	481, 1305
AcuI	CTGAAG	5 cut(s)	156, 348, 390, 555, 977
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	1235
AgeI	ACCGGT	1 cut(s)	940
AgsI	TTSAA	7 cut(s)	211, 293, 721, 753, 1059, 1304, 1311
AhlI	ACTAGT	2 cut(s)	746, 1135
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	7 cut(s)	140, 368, 551, 614, 626, 994, 1132
AluI	AGCT	7 cut(s)	140, 368, 551, 614, 626, 994, 1132
Alw26I	GTCTC	2 cut(s)	969, 1230
AlwI	GGATC	5 cut(s)	34, 258, 279, 584, 1316
Ama87I	CYCGRG	3 cut(s)	117, 1250, 1336
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	2 cut(s)	481, 1305
AsiGI	ACCGGT	1 cut(s)	940
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	4 cut(s)	59, 337, 718, 930
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	3 cut(s)	117, 1250, 1336
AvaII	GGWCC	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	1033
BanII	GRGCYC	1 cut(s)	124
BarI	GAAGNNNNNNTAC	2 cut(s)	388, 420
BbvI	GCAGC	1 cut(s)	635
BccI	CCATC	3 cut(s)	304, 927, 1075
BcoDI	GTCTC	2 cut(s)	969, 1230
BcuI	ACTAGT	2 cut(s)	746, 1135
BfaI	CTAG	6 cut(s)	339, 564, 582, 650, 747, 1136
BfmI	CTRYAG	1 cut(s)	1044
BfuAI	ACCTGC	1 cut(s)	1045
BglII	AGATCT	2 cut(s)	17, 131
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
Bme18I	GGWCC	1 cut(s)	530
BmeT110I	CYCGRG	3 cut(s)	117, 1250, 1336
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	1035
BmrI	ACTGGG	2 cut(s)	525, 600
BmsI	GCATC	1 cut(s)	190
BmtI	GCTAGC	1 cut(s)	342
BmuI	ACTGGG	2 cut(s)	525, 600
BpuEI	CTTGAG	1 cut(s)	869
Bsa29I	ATCGAT	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	220
BsaBI	GATNNNNATC	3 cut(s)	87, 1146, 1245
BsaI	GGTCTC	1 cut(s)	969
BsaWI	WCCGGW	2 cut(s)	556, 940
BsaXI	ACNNNNNCTCC	4 cut(s)	337, 367, 538, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	1235
Bse118I	RCCGGY	1 cut(s)	940
Bse1I	ACTGG	2 cut(s)	520, 595
Bse3DI	GCAATG	3 cut(s)	178, 449, 1174
Bse8I	GATNNNNATC	3 cut(s)	87, 1146, 1245
BseCI	ATCGAT	1 cut(s)	103
BseGI	GGATG	1 cut(s)	315
BseJI	GATNNNNATC	3 cut(s)	87, 1146, 1245
BseLI	CCNNNNNNNGG	1 cut(s)	1235
BseMI	GCAATG	3 cut(s)	178, 449, 1174
BseMII	CTCAG	3 cut(s)	123, 431, 1068
BseNI	ACTGG	2 cut(s)	520, 595
BseRI	GAGGAG	3 cut(s)	342, 345, 543
BseXI	GCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	829
Bsh1285I	CGRYCG	1 cut(s)	85
BshNI	GGYRCC	1 cut(s)	1033
BshTI	ACCGGT	1 cut(s)	940
BshVI	ATCGAT	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	85
BsiHKCI	CYCGRG	3 cut(s)	117, 1250, 1336
BsiSI	CCGG	3 cut(s)	359, 557, 941
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	1 cut(s)	1235
BsmAI	GTCTC	2 cut(s)	969, 1230
BsmBI	CGTCTC	1 cut(s)	1230
BsmFI	GGGAC	1 cut(s)	607
Bso31I	GGTCTC	1 cut(s)	969
BsoBI	CYCGRG	3 cut(s)	117, 1250, 1336
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	9 cut(s)	17, 26, 82, 131, 250, 271, 576, 1147, 1321
BspACI	CCGC	1 cut(s)	348
BspCNI	CTCAG	3 cut(s)	122, 430, 1069
BspDI	ATCGAT	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	1035
BspMAI	CTGCAG	1 cut(s)	1048
BspMI	ACCTGC	1 cut(s)	1045
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	5 cut(s)	34, 258, 279, 584, 1316
BspT107I	GGYRCC	1 cut(s)	1033
BspTNI	GGTCTC	1 cut(s)	969
BsrBI	CCGCTC	1 cut(s)	350
BsrDI	GCAATG	3 cut(s)	178, 449, 1174
BsrFI	RCCGGY	1 cut(s)	940
BsrI	ACTGG	2 cut(s)	520, 595
BssAI	RCCGGY	1 cut(s)	940
BssMI	GATC	9 cut(s)	17, 26, 82, 131, 250, 271, 576, 1147, 1321
Bst4CI	ACNGT	4 cut(s)	395, 809, 1213, 1288
Bst6I	CTCTTC	1 cut(s)	406
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	4 cut(s)	109, 417, 1027, 1077
BstENI	CCTNNNNNAGG	1 cut(s)	1233
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	9 cut(s)	20, 29, 85, 134, 253, 274, 579, 1150, 1324
BstMAI	GTCTC	2 cut(s)	969, 1230
BstMBI	GATC	9 cut(s)	17, 26, 82, 131, 250, 271, 576, 1147, 1321
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNSI	RCATGY	2 cut(s)	759, 782
BstSFI	CTRYAG	1 cut(s)	1044
BstSNI	TACGTA	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	635
BstX2I	RGATCY	2 cut(s)	17, 131
BstYI	RGATCY	2 cut(s)	17, 131
Bsu15I	ATCGAT	1 cut(s)	103
BsuTUI	ATCGAT	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	2 cut(s)	660, 1041
BtsIMutI	CAGTG	5 cut(s)	660, 912, 1008, 1041, 1184
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	940
Cfr13I	GGNCC	1 cut(s)	530
ClaI	ATCGAT	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	421
CspAI	ACCGGT	1 cut(s)	940
CviAII	CATG	4 cut(s)	756, 779, 980, 1102
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	4 cut(s)	109, 417, 1027, 1077
DpnI	GATC	9 cut(s)	19, 28, 84, 133, 252, 273, 578, 1149, 1323
DpnII	GATC	9 cut(s)	17, 26, 82, 131, 250, 271, 576, 1147, 1321
DrdI	GACNNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Eco105I	TACGTA	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	969
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	5 cut(s)	156, 348, 390, 555, 977
Eco88I	CYCGRG	3 cut(s)	117, 1250, 1336
EcoNI	CCTNNNNNAGG	1 cut(s)	1233
EcoO109I	RGGNCCY	1 cut(s)	530
EcoT38I	GRGCYC	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	1230
FaeI	CATG	4 cut(s)	759, 782, 983, 1105
FaiI	YATR	8 cut(s)	206, 440, 512, 757, 780, 981, 1103, 1278
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	4 cut(s)	755, 778, 979, 1101
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	6 cut(s)	339, 564, 582, 650, 747, 1136
GluI	GCNGC	1 cut(s)	624
HapII	CCGG	3 cut(s)	359, 557, 941
Hin1II	CATG	4 cut(s)	759, 782, 983, 1105
HindIII	AAGCTT	1 cut(s)	138
HpaII	CCGG	3 cut(s)	359, 557, 941
HphI	GGTGA	4 cut(s)	59, 337, 718, 930
Hpy188I	TCNGA	8 cut(s)	112, 136, 157, 180, 643, 1078, 1129, 1258
Hpy188III	TCNNGA	9 cut(s)	197, 248, 254, 275, 533, 1118, 1229, 1250, 1311
Hpy99I	CGWCG	2 cut(s)	83, 502
HpyAV	CCTTC	2 cut(s)	504, 1154
HpyCH4III	ACNGT	4 cut(s)	395, 809, 1213, 1288
HpyCH4IV	ACGT	2 cut(s)	219, 1022
HpyCH4V	TGCA	5 cut(s)	304, 671, 846, 1046, 1169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	4 cut(s)	109, 417, 1027, 1077
HpySE526I	ACGT	2 cut(s)	219, 1022
Hsp92II	CATG	4 cut(s)	759, 782, 983, 1105
Kzo9I	GATC	9 cut(s)	17, 26, 82, 131, 250, 271, 576, 1147, 1321
LmnI	GCTCC	4 cut(s)	355, 373, 556, 1129
Lsp1109I	GCAGC	1 cut(s)	635
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	6 cut(s)	339, 564, 582, 650, 747, 1136
MaeII	ACGT	2 cut(s)	219, 1022
MaeIII	GTNAC	7 cut(s)	52, 458, 544, 823, 853, 1182, 1288
MalI	GATC	9 cut(s)	19, 28, 84, 133, 252, 273, 578, 1149, 1323
MbiI	CCGCTC	1 cut(s)	350
MboI	GATC	9 cut(s)	17, 26, 82, 131, 250, 271, 576, 1147, 1321
MboII	GAAGA	7 cut(s)	135, 393, 396, 777, 927, 970, 1338
MfeI	CAATTG	1 cut(s)	849
MflI	RGATCY	2 cut(s)	17, 131
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	8 cut(s)	165, 266, 282, 481, 631, 849, 891, 1305
MlyI	GAGTC	4 cut(s)	187, 253, 511, 1262
MmeI	TCCRAC	2 cut(s)	395, 828
MnlI	CCTC	8 cut(s)	134, 353, 363, 366, 564, 891, 1024, 1335
MseI	TTAA	1 cut(s)	1353
MspI	CCGG	3 cut(s)	359, 557, 941
MunI	CAATTG	1 cut(s)	849
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeII	GATC	9 cut(s)	17, 26, 82, 131, 250, 271, 576, 1147, 1321
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	4 cut(s)	759, 782, 983, 1105
NlaIV	GGNNCC	1 cut(s)	1035
NmuCI	GTSAC	2 cut(s)	1182, 1288
NspI	RCATGY	2 cut(s)	759, 782
PaeR7I	CTCGAG	3 cut(s)	117, 1250, 1336
PaqCI	CACCTGC	1 cut(s)	1045
PfeI	GAWTC	7 cut(s)	31, 105, 158, 731, 867, 1232, 1300
PinAI	ACCGGT	1 cut(s)	940
PkrI	GCNGC	1 cut(s)	625
Ple19I	CGATCG	1 cut(s)	85
PleI	GAGTC	4 cut(s)	187, 252, 510, 1261
PpsI	GAGTC	4 cut(s)	187, 252, 510, 1261
Ppu21I	YACGTR	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	1035
PspPI	GGNCC	1 cut(s)	530
PspPPI	RGGWCCY	1 cut(s)	530
PspXI	VCTCGAGB	2 cut(s)	117, 1336
PstI	CTGCAG	1 cut(s)	1048
PsuI	RGATCY	2 cut(s)	17, 131
PvuI	CGATCG	1 cut(s)	85
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	1353
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	9 cut(s)	17, 26, 82, 131, 250, 271, 576, 1147, 1321
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	4 cut(s)	187, 253, 511, 1262
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	1044
Sfr274I	CTCGAG	3 cut(s)	117, 1250, 1336
SinI	GGWCC	1 cut(s)	530
SlaI	CTCGAG	3 cut(s)	117, 1250, 1336
SmlI	CTYRAG	4 cut(s)	117, 884, 1250, 1336
SmoI	CTYRAG	4 cut(s)	117, 884, 1250, 1336
SnaBI	TACGTA	1 cut(s)	220
SpeI	ACTAGT	2 cut(s)	746, 1135
Sse9I	AATT	8 cut(s)	165, 266, 282, 481, 631, 849, 891, 1305
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	6 cut(s)	339, 564, 582, 650, 747, 1136
TaaI	ACNGT	4 cut(s)	395, 809, 1213, 1288
TaiI	ACGT	2 cut(s)	222, 1025
TaqI	TCGA	9 cut(s)	11, 29, 81, 103, 118, 497, 1146, 1251, 1337
TasI	AATT	8 cut(s)	165, 266, 282, 481, 631, 849, 891, 1305
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	7 cut(s)	31, 105, 158, 731, 867, 1232, 1300
Tru1I	TTAA	1 cut(s)	1353
Tru9I	TTAA	1 cut(s)	1353
TscAI	CASTG	5 cut(s)	660, 912, 1015, 1048, 1191
TseFI	GTSAC	2 cut(s)	1182, 1288
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	2 cut(s)	1182, 1288
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	5 cut(s)	660, 912, 1015, 1048, 1191
VpaK11BI	GGWCC	1 cut(s)	530
XagI	CCTNNNNNAGG	1 cut(s)	1233
XapI	RAATTY	2 cut(s)	481, 1305
XceI	RCATGY	2 cut(s)	759, 782
XhoI	CTCGAG	3 cut(s)	117, 1250, 1336
XspI	CTAG	6 cut(s)	339, 564, 582, 650, 747, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.