Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Forward (+)

9413217 .. 9413762

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG081300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGAAGCAATCTGAAGCCAGAAATAAGAGAATCTGGGCCAGGGCACCTCATCCAGATCGCCTTCCTCATCAACAAGTGTCAAAGAGCTTGCTGAGTTTGTTTGAGATTCTGATCAAGTACATAGCATTGAAGGAGCAGAAAGTGTTGGACCATGAGAAGGTTCAAGTGGAGCAAGAGAAGACCAGGGTTCAGAAGTTGTTGAATGGGTTGCAGAACTCAATAAACGTTTACAATGCCAGTGGAAACCCCCAAGTCTCCAAAGTTTCGAATGCGGCACCGAAACAAATGCACATGGCTCCTCAGTCTCGCCTATCTAATGAGTCTTCTACAGGTACAATCCTAACCCCATTTGCTTGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.63

Weight (kDa)

9.94

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	46, 277
AciI	CCGC	1 cut(s)	275
AclI	AACGTT	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	122, 337
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	133, 167, 205
AjnI	CCWGG	2 cut(s)	41, 185
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw26I	GTCTC	2 cut(s)	262, 312
AoxI	GGCC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	39, 151
AsuII	TTCGAA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	49
BanI	GGYRCC	2 cut(s)	46, 277
BbsI	GAAGAC	2 cut(s)	188, 318
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	2 cut(s)	43, 187
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	262, 312
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	43, 187
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	39, 151
BmiI	GGNNCC	3 cut(s)	48, 279, 300
BmrFI	CCNGG	2 cut(s)	43, 187
BpiI	GAAGAC	2 cut(s)	188, 318
Bpu14I	TTCGAA	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	42, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	43, 187
BseDI	CCNNGG	2 cut(s)	42, 186
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	86, 317
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	2 cut(s)	46, 277
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	262, 312
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	58, 114
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	87, 316
BspLI	GGNNCC	3 cut(s)	48, 279, 300
BspT104I	TTCGAA	1 cut(s)	269
BspT107I	GGYRCC	2 cut(s)	46, 277
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	42, 186
BssMI	GATC	2 cut(s)	58, 114
Bst2UI	CCWGG	2 cut(s)	43, 187
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	95, 303
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	61, 117
BstMAI	GTCTC	2 cut(s)	262, 312
BstMBI	GATC	2 cut(s)	58, 114
BstNI	CCWGG	2 cut(s)	43, 187
BstSCI	CCNGG	2 cut(s)	41, 185
BstSFI	CTRYAG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	49
BstV2I	GAAGAC	2 cut(s)	188, 318
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	39, 151
Csp6I	GTAC	2 cut(s)	121, 336
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	2 cut(s)	155, 295
CviJI	RGCY	4 cut(s)	20, 41, 90, 299
CviKI_1	RGCY	4 cut(s)	20, 41, 90, 299
CviQI	GTAC	2 cut(s)	121, 336
DdeI	CTNAG	2 cut(s)	95, 303
DpnI	GATC	2 cut(s)	60, 116
DpnII	GATC	2 cut(s)	58, 114
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	41, 185
FaeI	CATG	2 cut(s)	158, 298
FaiI	YATR	3 cut(s)	125, 156, 296
FatI	CATG	2 cut(s)	154, 294
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	158, 298
HinfI	GANTC	3 cut(s)	33, 109, 323
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	16, 114, 195
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	3 cut(s)	74, 127, 154
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	214, 292
HpyF3I	CTNAG	2 cut(s)	95, 303
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	158, 298
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	58, 114
LmnI	GCTCC	3 cut(s)	136, 172, 304
LpnPI	CCDG	9 cut(s)	22, 28, 34, 55, 69, 172, 199, 253, 318
MaeII	ACGT	1 cut(s)	228
MalI	GATC	2 cut(s)	60, 116
MboI	GATC	2 cut(s)	58, 114
MboII	GAAGA	2 cut(s)	193, 318
MhlI	GDGCHC	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	3 cut(s)	60, 78, 312
MspR9I	CCNGG	2 cut(s)	43, 187
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	2 cut(s)	43, 187
NdeII	GATC	2 cut(s)	58, 114
NlaIII	CATG	2 cut(s)	158, 298
NlaIV	GGNNCC	3 cut(s)	48, 279, 300
NspV	TTCGAA	1 cut(s)	269
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	33, 109
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	41, 185
PspGI	CCWGG	2 cut(s)	41, 185
PspN4I	GGNNCC	3 cut(s)	48, 279, 300
PspPI	GGNCC	2 cut(s)	39, 151
RsaI	GTAC	2 cut(s)	122, 337
RsaNI	GTAC	2 cut(s)	121, 336
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	2 cut(s)	58, 114
Sau96I	GGNCC	2 cut(s)	39, 151
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	43, 187
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	5 cut(s)	52, 92, 165, 231, 337
SfcI	CTRYAG	1 cut(s)	330
SfuI	TTCGAA	1 cut(s)	269
SinI	GGWCC	1 cut(s)	151
SsiI	CCGC	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	41, 185
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	269
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	33, 109
TscAI	CASTG	1 cut(s)	247
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.