Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Reverse (-)

21432723 .. 21436251

Gene Structure 3529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017801

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGAAGCAATCTGAAGCTAGAAATAAGAGAATCTGGGCCAGGGCACCTCATCCAGATCGCCTTCCTCATCAACAAAGCTTGCTGAGTTTGTCTGAGATTCTGATCAAGTACATAGCATTGAAGGAGCAGAAAGTGTTGGACCATGAGAAGGTTCAAGTGGAGCAACAGAAGACCAGGGTTCAGAAGTTGTTGAATGGGTTGCAGAACTCAATAAACGTTTACAATGCCAGCGGAAACCCCCAAATCTCCAAAGTTTCAAATGCGGCACCGAAACAAATGCACATGGCTCCTCAGTCTCGCCTATCTAATGGGTCTTCTACAGTTGCTAAGAGTGTTGCTCTATCACCTACCAATGGAGTTAACTATTATTCCTTAGTTGGTTGTCTTCCTTTTAATCTTCAGTACGGTGAAAATGTCACAATTGGAAGCATGGTCTTCACCATGGAAAATATCTTCAAAGTTCTCGCTCCTTGTTTTGCATTTGTGAACGAGATTGATGCTATTGCTGGAAGGCATGCAAGACATGATCCTAGAAGAAGAGCAACATTTGAGGCTTTGATTGCACAGCTCGATGGGGGAGGCCTTGTATTGATGTGGCTGCCAAATGAAAGGAAGAAAAAAACTGGTGTTGATCGCTTCTCTCTCAAACAAGCTGTCATATTCATCTGTGCTACCAACATGCCAGATGAATTAGACCTTGAATTTGTTCGATCTGGACGTATTGACCGTCGACTGTACATTGGTTTAACTGATGCAAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

256

Amino Acids

28.58

Weight (kDa)

9.76

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	141 - 249	2.9e-11	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	46, 268
AccI	GTMKAC	1 cut(s)	733
AciI	CCGC	2 cut(s)	234, 266
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	1 cut(s)	524
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	2 cut(s)	36, 386
AfaI	GTAC	3 cut(s)	113, 407, 740
AfiI	CCNNNNNNNGG	2 cut(s)	151, 356
AgsI	TTSAA	6 cut(s)	124, 158, 196, 261, 460, 704
AjnI	CCWGG	2 cut(s)	41, 176
AluBI	AGCT	4 cut(s)	20, 81, 571, 656
AluI	AGCT	4 cut(s)	20, 81, 571, 656
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	524
AoxI	GGCC	2 cut(s)	39, 583
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	1 cut(s)	704
ArsI	GACNNNNNNTTYG	4 cut(s)	642, 674, 689, 721
Asp700I	GAANNNNTTC	1 cut(s)	708
AspS9I	GGNCC	2 cut(s)	39, 142
AsuHPI	GGTGA	3 cut(s)	339, 422, 433
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	49
BanI	GGYRCC	2 cut(s)	46, 268
BbsI	GAAGAC	4 cut(s)	179, 309, 380, 430
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	1 cut(s)	569
BcgI	CGANNNNNNTGC	4 cut(s)	262, 296, 482, 516
BciT130I	CCWGG	2 cut(s)	43, 178
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	2 cut(s)	21, 534
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	2 cut(s)	267, 602
BlsI	GCNGC	2 cut(s)	268, 603
Bme1390I	CCNGG	2 cut(s)	43, 178
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	39, 142
BmiI	GGNNCC	3 cut(s)	48, 270, 291
BmrFI	CCNGG	2 cut(s)	43, 178
BmsI	GCATC	2 cut(s)	490, 745
BpiI	GAAGAC	4 cut(s)	179, 309, 380, 430
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BsaBI	GATNNNNATC	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	42, 177, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 356
Bse1I	ACTGG	1 cut(s)	631
Bse8I	GATNNNNATC	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	43, 178
BseDI	CCNNGG	3 cut(s)	42, 177, 444
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	2 cut(s)	151, 356
BseMII	CTCAG	3 cut(s)	77, 87, 308
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	588
BshFI	GGCC	2 cut(s)	41, 585
BshNI	GGYRCC	2 cut(s)	46, 268
BslI	CCNNNNNNNGG	2 cut(s)	151, 356
BsmAI	GTCTC	1 cut(s)	303
BsnI	GGCC	2 cut(s)	41, 585
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp1407I	TGTACA	1 cut(s)	738
Bsp143I	GATC	5 cut(s)	58, 105, 529, 634, 713
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	2 cut(s)	234, 266
BspANI	GGCC	2 cut(s)	41, 585
BspCNI	CTCAG	3 cut(s)	78, 88, 307
BspLI	GGNNCC	3 cut(s)	48, 270, 291
BspPI	GGATC	1 cut(s)	524
BspQI	GCTCTTC	1 cut(s)	535
BspT107I	GGYRCC	2 cut(s)	46, 268
BsrGI	TGTACA	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	3 cut(s)	42, 177, 444
BssMI	GATC	5 cut(s)	58, 105, 529, 634, 713
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	43, 178
Bst4CI	ACNGT	4 cut(s)	325, 410, 731, 738
Bst6I	CTCTTC	1 cut(s)	535
BstAUI	TGTACA	1 cut(s)	738
BstC8I	GCNNGC	3 cut(s)	83, 232, 519
BstDEI	CTNAG	5 cut(s)	86, 96, 294, 330, 376
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	5 cut(s)	61, 108, 532, 637, 716
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	5 cut(s)	58, 105, 529, 634, 713
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	2 cut(s)	43, 178
BstNSI	RCATGY	2 cut(s)	521, 685
BstSCI	CCNGG	2 cut(s)	41, 176
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	4 cut(s)	179, 309, 380, 430
BsuRI	GGCC	2 cut(s)	41, 585
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	3 cut(s)	83, 232, 519
Cfr13I	GGNCC	2 cut(s)	39, 142
Csp6I	GTAC	3 cut(s)	112, 406, 739
CviAII	CATG	7 cut(s)	146, 286, 433, 445, 518, 527, 682
CviJI	RGCY	9 cut(s)	20, 41, 81, 290, 557, 571, 585, 601, 656
CviKI_1	RGCY	9 cut(s)	20, 41, 81, 290, 557, 571, 585, 601, 656
CviQI	GTAC	3 cut(s)	112, 406, 739
DdeI	CTNAG	5 cut(s)	86, 96, 294, 330, 376
DpnI	GATC	5 cut(s)	60, 107, 531, 636, 715
DpnII	GATC	5 cut(s)	58, 105, 529, 634, 713
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	444
Eco147I	AGGCCT	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	36, 386
EcoRII	CCWGG	2 cut(s)	41, 176
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	7 cut(s)	149, 289, 436, 448, 521, 530, 685
FaiI	YATR	9 cut(s)	116, 147, 287, 434, 446, 519, 528, 662, 683
FatI	CATG	7 cut(s)	145, 285, 432, 444, 517, 526, 681
FbaI	TGATCA	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	733
Fnu4HI	GCNGC	2 cut(s)	267, 602
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	267, 602
FspBI	CTAG	2 cut(s)	21, 534
GluI	GCNGC	2 cut(s)	267, 602
HaeIII	GGCC	2 cut(s)	41, 585
Hin1II	CATG	7 cut(s)	149, 289, 436, 448, 521, 530, 685
HincII	GTYRAC	2 cut(s)	364, 734
HindII	GTYRAC	2 cut(s)	364, 734
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	2 cut(s)	33, 100
HpaI	GTTAAC	1 cut(s)	364
HphI	GGTGA	3 cut(s)	339, 422, 433
Hpy166II	GTNNAC	4 cut(s)	223, 364, 490, 734
Hpy188I	TCNGA	4 cut(s)	16, 97, 105, 186
Hpy188III	TCNNGA	2 cut(s)	56, 717
Hpy8I	GTNNAC	4 cut(s)	223, 364, 490, 734
Hpy99I	CGWCG	1 cut(s)	735
HpyAV	CCTTC	4 cut(s)	74, 118, 145, 507
HpyCH4III	ACNGT	4 cut(s)	325, 410, 731, 738
HpyCH4IV	ACGT	2 cut(s)	219, 721
HpyCH4V	TGCA	6 cut(s)	205, 283, 482, 521, 566, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	5 cut(s)	86, 96, 294, 330, 376
HpySE526I	ACGT	2 cut(s)	219, 721
Hsp92II	CATG	7 cut(s)	149, 289, 436, 448, 521, 530, 685
Ksp22I	TGATCA	1 cut(s)	105
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	58, 105, 529, 634, 713
LguI	GCTCTTC	1 cut(s)	535
LmnI	GCTCC	4 cut(s)	127, 163, 295, 475
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	2 cut(s)	490, 745
MaeI	CTAG	2 cut(s)	21, 534
MaeII	ACGT	2 cut(s)	219, 721
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	5 cut(s)	60, 107, 531, 636, 715
MboI	GATC	5 cut(s)	58, 105, 529, 634, 713
MboII	GAAGA	9 cut(s)	184, 309, 380, 392, 430, 448, 549, 552, 628
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	3 cut(s)	423, 692, 704
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	60, 78, 303, 547, 575
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	3 cut(s)	363, 396, 749
MspA1I	CMGCKG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	43, 178
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	43, 178
MwoI	GCNNNNNNNGC	1 cut(s)	563
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	5 cut(s)	58, 105, 529, 634, 713
NlaIII	CATG	7 cut(s)	149, 289, 436, 448, 521, 530, 685
NlaIV	GGNNCC	3 cut(s)	48, 270, 291
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	2 cut(s)	521, 685
PaeI	GCATGC	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	585
PciSI	GCTCTTC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	2 cut(s)	718, 727
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	33, 100
PkrI	GCNGC	2 cut(s)	268, 603
Psp1406I	AACGTT	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	41, 176
PspGI	CCWGG	2 cut(s)	41, 176
PspN4I	GGNNCC	3 cut(s)	48, 270, 291
PspPI	GGNCC	2 cut(s)	39, 142
RsaI	GTAC	3 cut(s)	113, 407, 740
RsaNI	GTAC	3 cut(s)	112, 406, 739
SalI	GTCGAC	1 cut(s)	732
SapI	GCTCTTC	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	363, 396, 749
SatI	GCNGC	2 cut(s)	267, 602
Sau3AI	GATC	5 cut(s)	58, 105, 529, 634, 713
Sau96I	GGNCC	2 cut(s)	39, 142
ScrFI	CCNGG	2 cut(s)	43, 178
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	2 cut(s)	490, 745
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	142
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	3 cut(s)	423, 692, 704
SseBI	AGGCCT	1 cut(s)	585
SsiI	CCGC	2 cut(s)	234, 266
SspMI	CTAG	2 cut(s)	21, 534
StuI	AGGCCT	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	41, 176
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	4 cut(s)	325, 410, 731, 738
TaiI	ACGT	2 cut(s)	222, 724
TaqI	TCGA	3 cut(s)	573, 712, 733
TasI	AATT	3 cut(s)	423, 692, 704
TatI	WGTACW	2 cut(s)	111, 738
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	33, 100
Tru1I	TTAA	3 cut(s)	363, 396, 749
Tru9I	TTAA	3 cut(s)	363, 396, 749
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	624, 655, 705
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	2 cut(s)	521, 685
XmiI	GTMKAC	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	2 cut(s)	21, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.