Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Forward (+)

49395559 .. 49399516

Gene Structure 3958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCTGGATAGCTATGCTGATGAGGGACCCCATGAGGAACTCATACATGAGGAGCAATCTAAAGCCAAGAAATCGGAGAATTTGGGAAAGGGTACCGTCACACCCGTGCAGATTGCCTTCCTCGTCAACCTGTTTCTCTTTGATAACAGCTACACCGAAGCCTGCTTCGTTTTCCGAACTGAAGCCTCCTCACTCTTCTCTACGTCTCCGATTCAAGAGGTCAGTATGTTGAGCCTTATTCAGATACAGAAGAAGACAAAGCTGCAGCGTATGAGGATGTCACTTGGGAAGATTTTGCTTCAGCACCCTGATTTACTCCTGCTGGAGGAGTCTACAAATCACCTTGACCTTGACACTGTCGAGTGGCTCGAAGATTATCTCAATCAGCAAGATGTGCGCTCCAATGGTTATCATATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.06

Weight (kDa)

4.91

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	2 cut(s)	201, 284
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	215
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	3 cut(s)	12, 150, 262
AluI	AGCT	3 cut(s)	12, 150, 262
Alw26I	GTCTC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	262, 265
ApoI	RAATTY	1 cut(s)	79
Asp718I	GGTACC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	249, 277
BcoDI	GTCTC	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	263
BisI	GCNGC	2 cut(s)	263, 266
BlsI	GCNGC	2 cut(s)	264, 267
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	27, 28, 94
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseRI	GAGGAG	3 cut(s)	65, 178, 341
BseXI	GCAGC	2 cut(s)	249, 277
BsgI	GTGCAG	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	210
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	419
BspLI	GGNNCC	3 cut(s)	27, 28, 94
BspMAI	CTGCAG	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	97, 358
Bst6I	CTCTTC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	163
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	249, 277
BstV2I	GAAGAC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	163
CciI	TCATGA	1 cut(s)	419
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	3 cut(s)	32, 47, 420
CviJI	RGCY	8 cut(s)	12, 65, 150, 161, 185, 234, 262, 367
CviKI_1	RGCY	8 cut(s)	12, 65, 150, 161, 185, 234, 262, 367
CviQI	GTAC	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	2 cut(s)	201, 284
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	3 cut(s)	35, 50, 423
FaiI	YATR	8 cut(s)	15, 33, 44, 48, 227, 272, 414, 421
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	31, 46, 419
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	2 cut(s)	263, 266
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	263, 266
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	2 cut(s)	263, 266
GsuI	CTGGAG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	35, 50, 423
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	211, 329
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	127, 333
Hpy188I	TCNGA	4 cut(s)	76, 176, 210, 243
Hpy188III	TCNNGA	2 cut(s)	215, 420
Hpy8I	GTNNAC	2 cut(s)	127, 333
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	97, 358
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	109, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	35, 50, 423
HspAI	GCGC	1 cut(s)	397
KflI	GGGWCCC	1 cut(s)	26
KpnI	GGTACC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	52, 404
LpnPI	CCDG	5 cut(s)	143, 175, 308, 321, 332
Lsp1109I	GCAGC	2 cut(s)	249, 277
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	97, 279
MboII	GAAGA	5 cut(s)	187, 262, 265, 301, 383
MluCI	AATT	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	9 cut(s)	16, 28, 43, 131, 196, 199, 211, 267, 319
MslI	CAYNNNNRTG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	394
NlaIII	CATG	3 cut(s)	35, 50, 423
NlaIV	GGNNCC	3 cut(s)	27, 28, 94
NmuCI	GTSAC	2 cut(s)	97, 279
OliI	CACNNNNGTG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	211
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	264, 267
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	27, 28, 94
PspPI	GGNCC	1 cut(s)	26
PspPPI	RGGWCCY	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	267
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	104
SatI	GCNGC	2 cut(s)	263, 266
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	338
SetI	ASST	8 cut(s)	14, 132, 152, 206, 222, 264, 345, 351
SfcI	CTRYAG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	97, 358
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	360, 369
TasI	AATT	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	211
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	97, 279
TseI	GCWGC	2 cut(s)	262, 265
Tsp45I	GTSAC	2 cut(s)	97, 279
TspRI	CASTG	1 cut(s)	361
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	26
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.