Rmu_sc0032722.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032722.1
OG0002081
Physical Location & Seq
Reverse (-)
1 .. 1295
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032722.1_g000001.1.cds

Sequence Viewer

Length: 610 bp
atggccaagcaatctaaagccaagaagtcggagactctcggcaagggcaccgtcacccccgtccagatcgccttcctcgtcgaccagtacctctccgataacagctacgccgaagcccgctccgttttccgaaccgaagcctcctctctcttctccaagtcccccattcgagaggtgccgaagagcttgctgagtctgtctgagattctgaacgagtacatagcgttgaaggagcagaaggtgttgctggaccacgacaaggttcgggtggagcaggagaagaccagggttcagacgcttttgaatgggttgcagaactccatgaacatttacaatgctggtggaaacccccaaatctccagagctcccgatgcggcgccgaaacagatgctcatggctcctcagcctcgcctatctaatgggtcttctgcagttgttcatccagtggtcacacccaccaacaccaacatggggcctgcaaatttctgctcaccaatcataagtaacccacctgcaactaagagaaagggttccaacgctgttgctgatgcccctcatgctgctaagagatctcgcggcaaagcatctgccactaagattccaaacaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.91

Weight (kDa)

10.0

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 520
AccB1I GGYRCC 3 cut(s) 47, 175, 376
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 81
AccII CGCG 1 cut(s) 576
AciI CCGC 3 cut(s) 118, 374, 576
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 481
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 2 cut(s) 89, 218
AfiI CCNNNNNNNGG 2 cut(s) 259, 471
AgsI TTSAA 2 cut(s) 229, 304
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 3 cut(s) 105, 186, 365
AluI AGCT 3 cut(s) 105, 186, 365
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 26
AoxI GGCC 2 cut(s) 3, 473
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 1 cut(s) 481
Asp700I GAANNNNTTC 1 cut(s) 529
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 250, 473
AsuHPI GGTGA 2 cut(s) 46, 483
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 50
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 3 cut(s) 47, 175, 376
BanII GRGCYC 1 cut(s) 367
BbsI GAAGAC 2 cut(s) 287, 417
Bbv12I GWGCWC 1 cut(s) 367
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 547
BcgI CGANNNNNNTGC 4 cut(s) 169, 203, 370, 404
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 520
BglII AGATCT 1 cut(s) 569
BisI GCNGC 3 cut(s) 375, 561, 577
BlsI GCNGC 3 cut(s) 376, 562, 578
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 250, 473
BmiI GGNNCC 6 cut(s) 49, 177, 378, 399, 474, 532
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 4 cut(s) 361, 378, 538, 593
BpiI GAAGAC 2 cut(s) 287, 417
BpmI CTGGAG 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 471
Bse1I ACTGG 2 cut(s) 85, 443
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 2 cut(s) 259, 471
BseMII CTCAG 3 cut(s) 182, 192, 416
BseNI ACTGG 2 cut(s) 85, 443
BseRI GAGGAG 2 cut(s) 133, 390
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 1 cut(s) 547
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 2 cut(s) 5, 475
BshNI GGYRCC 3 cut(s) 47, 175, 376
BsiHKAI GWGCWC 1 cut(s) 367
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 259, 471
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 2 cut(s) 5, 475
Bsp1286I GDGCHC 2 cut(s) 50, 367
Bsp143I GATC 2 cut(s) 66, 569
BspACI CCGC 3 cut(s) 118, 374, 576
BspANI GGCC 2 cut(s) 5, 475
BspCNI CTCAG 3 cut(s) 183, 193, 415
BspFNI CGCG 1 cut(s) 576
BspLI GGNNCC 6 cut(s) 49, 177, 378, 399, 474, 532
BspMAI CTGCAG 1 cut(s) 433
BspMI ACCTGC 1 cut(s) 520
BspQI GCTCTTC 1 cut(s) 176
BspT107I GGYRCC 3 cut(s) 47, 175, 376
BsrBI CCGCTC 1 cut(s) 120
BsrI ACTGG 2 cut(s) 85, 443
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 2 cut(s) 66, 569
BssNI GRCGYC 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 2 cut(s) 155, 176
BstACI GRCGYC 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 118, 188, 477
BstDEI CTNAG 6 cut(s) 191, 201, 402, 519, 564, 594
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 1 cut(s) 576
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 2 cut(s) 69, 572
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 2 cut(s) 66, 569
BstMWI GCNNNNNNNGC 2 cut(s) 371, 557
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 50
BstUI CGCG 1 cut(s) 576
BstV1I GCAGC 1 cut(s) 547
BstV2I GAAGAC 2 cut(s) 287, 417
BstX2I RGATCY 1 cut(s) 569
BstYI RGATCY 1 cut(s) 569
BsuRI GGCC 2 cut(s) 5, 475
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 3 cut(s) 118, 188, 477
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 250, 473
CseI GACGC 1 cut(s) 304
Csp6I GTAC 2 cut(s) 88, 217
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 4 cut(s) 322, 394, 469, 557
CviQI GTAC 2 cut(s) 88, 217
DdeI CTNAG 6 cut(s) 191, 201, 402, 519, 564, 594
DinI GGCGCC 1 cut(s) 378
DpnI GATC 2 cut(s) 68, 571
DpnII GATC 2 cut(s) 66, 569
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 155, 176
EarI CTCTTC 2 cut(s) 155, 176
Ecl136II GAGCTC 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 367
EgeI GGCGCC 1 cut(s) 378
EheI GGCGCC 1 cut(s) 378
FaeI CATG 4 cut(s) 325, 397, 472, 560
FaiI YATR 6 cut(s) 221, 323, 395, 470, 500, 558
FaqI GGGAC 1 cut(s) 145
FatI CATG 4 cut(s) 321, 393, 468, 556
FauI CCCGC 1 cut(s) 125
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 375, 561, 577
FokI GGATG 1 cut(s) 426
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 3 cut(s) 375, 561, 577
GlaI GCGC 1 cut(s) 378
GluI GCNGC 3 cut(s) 375, 561, 577
GsuI CTGGAG 1 cut(s) 343
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 2 cut(s) 5, 475
HgaI GACGC 1 cut(s) 304
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 4 cut(s) 325, 397, 472, 560
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 4 cut(s) 34, 193, 205, 598
HphI GGTGA 2 cut(s) 46, 483
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 6 cut(s) 31, 97, 131, 202, 210, 294
Hpy188III TCNNGA 4 cut(s) 64, 170, 360, 368
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 82, 223, 232
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 4 cut(s) 313, 431, 479, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 557
HpyF3I CTNAG 6 cut(s) 191, 201, 402, 519, 564, 594
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 4 cut(s) 325, 397, 472, 560
HspAI GCGC 1 cut(s) 377
KasI GGCGCC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 66, 569
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 5 cut(s) 125, 232, 271, 370, 403
Lsp1109I GCAGC 1 cut(s) 547
LweI GCATC 4 cut(s) 361, 378, 538, 593
MaeIII GTNAC 3 cut(s) 52, 448, 503
MalI GATC 2 cut(s) 68, 571
MbiI CCGCTC 1 cut(s) 120
MboI GATC 2 cut(s) 66, 569
MboII GAAGA 4 cut(s) 142, 193, 292, 417
MflI RGATCY 1 cut(s) 569
MhlI GDGCHC 2 cut(s) 50, 367
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 481
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 377
MlyI GAGTC 2 cut(s) 28, 202
MmeI TCCRAC 2 cut(s) 9, 558
MnlI CCTC 8 cut(s) 86, 101, 151, 154, 166, 411, 417, 564
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 529
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 467
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 2 cut(s) 371, 557
NarI GGCGCC 1 cut(s) 377
NdeII GATC 2 cut(s) 66, 569
NlaIII CATG 4 cut(s) 325, 397, 472, 560
NlaIV GGNNCC 6 cut(s) 49, 177, 378, 399, 474, 532
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 52, 448
PaqCI CACCTGC 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 529
PfeI GAWTC 2 cut(s) 205, 598
PkrI GCNGC 3 cut(s) 376, 562, 578
PleI GAGTC 2 cut(s) 28, 201
PluTI GGCGCC 1 cut(s) 380
PpsI GAGTC 2 cut(s) 28, 201
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 6 cut(s) 49, 177, 378, 399, 474, 532
PspPI GGNCC 2 cut(s) 250, 473
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 569
RsaI GTAC 2 cut(s) 89, 218
RsaNI GTAC 2 cut(s) 88, 217
RseI CAYNNNNRTG 1 cut(s) 467
SacI GAGCTC 1 cut(s) 367
SalI GTCGAC 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 176
SatI GCNGC 3 cut(s) 375, 561, 577
Sau3AI GATC 2 cut(s) 66, 569
Sau96I GGNCC 2 cut(s) 250, 473
SchI GAGTC 2 cut(s) 28, 202
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 2 cut(s) 50, 367
SetI ASST 8 cut(s) 93, 107, 177, 188, 243, 264, 367, 514
SfaNI GCATC 4 cut(s) 361, 378, 538, 593
SfcI CTRYAG 1 cut(s) 429
SfoI GGCGCC 1 cut(s) 378
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 467
Sse9I AATT 1 cut(s) 481
SsiI CCGC 3 cut(s) 118, 374, 576
SspDI GGCGCC 1 cut(s) 376
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 81, 169
TasI AATT 1 cut(s) 481
TatI WGTACW 1 cut(s) 216
TauI GCSGC 2 cut(s) 377, 579
TfiI GAWTC 2 cut(s) 205, 598
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 2 cut(s) 52, 448
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 2 cut(s) 52, 448
TspDTI ATGAA 2 cut(s) 338, 428
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.