Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041392.1

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Forward (+)

263 .. 813

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041392.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggccaagcaatctaaagccaagaagtcggagactctcggcaagggcaccgtcacccccgtccagatcgccttcctcgtcgaccagtacctctccgataacagctactccgaagcccgctccgttttccgaaccgaagcctcctcgctcttctccaagtcccccattcgagaggtgccgaagagcttgctgagtctgtctgagattctgaacgagtacatagcgttgaaggagcagaaggtgttgctggaccacgacaaggttcgggtggagcaggagaagaccagggttcagacgcttttgaatgggttgcagaactccatgaacatttacaatgctggtggaaacccccaaatctccagagctcccgatgcggcgccgaaacagatgctcatggctcctcagcctcgcctatctaatgggtcttctgcaggtatagtcctaaccccatctggttgtatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.81

Weight (kDa)

9.41

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	422
AccB1I	GGYRCC	3 cut(s)	47, 175, 376
AccBSI	CCGCTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	2 cut(s)	118, 374
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	2 cut(s)	89, 218
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	229, 304
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	3 cut(s)	105, 186, 365
AluI	AGCT	3 cut(s)	105, 186, 365
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	3 cut(s)	47, 175, 376
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	287, 417
Bbv12I	GWGCWC	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	402
BccI	CCATC	1 cut(s)	457
BcgI	CGANNNNNNTGC	4 cut(s)	169, 203, 370, 404
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	422
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	4 cut(s)	49, 177, 378, 399
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	2 cut(s)	361, 378
BpiI	GAAGAC	2 cut(s)	287, 417
BpmI	CTGGAG	1 cut(s)	343
Bpu10I	CCTNAGC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	3 cut(s)	182, 192, 416
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	133, 390
BseSI	GKGCMC	1 cut(s)	50
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	3 cut(s)	47, 175, 376
BsiHKAI	GWGCWC	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	50, 367
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	118, 374
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	183, 193, 415
BspLI	GGNNCC	4 cut(s)	49, 177, 378, 399
BspMAI	CTGCAG	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	422
BspQI	GCTCTTC	2 cut(s)	155, 176
BspT107I	GGYRCC	3 cut(s)	47, 175, 376
BsrBI	CCGCTC	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	155, 176
BstACI	GRCGYC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	118, 188
BstDEI	CTNAG	3 cut(s)	191, 201, 402
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	50
BstV2I	GAAGAC	2 cut(s)	287, 417
BsuRI	GGCC	1 cut(s)	5
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	118, 188
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	88, 217
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	2 cut(s)	322, 394
CviJI	RGCY	9 cut(s)	5, 20, 105, 116, 140, 186, 365, 398, 406
CviKI_1	RGCY	9 cut(s)	5, 20, 105, 116, 140, 186, 365, 398, 406
CviQI	GTAC	2 cut(s)	88, 217
DdeI	CTNAG	3 cut(s)	191, 201, 402
DinI	GGCGCC	1 cut(s)	378
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	155, 176
EarI	CTCTTC	2 cut(s)	155, 176
Ecl136II	GAGCTC	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	367
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
FaeI	CATG	2 cut(s)	325, 397
FaiI	YATR	4 cut(s)	221, 323, 395, 437
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	2 cut(s)	321, 393
FauI	CCCGC	1 cut(s)	125
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	375
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	343
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	325, 397
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	34, 193, 205
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	7 cut(s)	31, 97, 112, 131, 202, 210, 294
Hpy188III	TCNNGA	4 cut(s)	64, 170, 360, 368
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	82, 223, 232
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	313, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	3 cut(s)	191, 201, 402
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	325, 397
HspAI	GCGC	1 cut(s)	377
KasI	GGCGCC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	66
LguI	GCTCTTC	2 cut(s)	155, 176
LmnI	GCTCC	5 cut(s)	125, 232, 271, 370, 403
LweI	GCATC	2 cut(s)	361, 378
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	68
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	1 cut(s)	66
MboII	GAAGA	4 cut(s)	142, 193, 292, 417
MhlI	GDGCHC	2 cut(s)	50, 367
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	28, 202
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	7 cut(s)	86, 101, 151, 154, 166, 411, 417
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	371
NarI	GGCGCC	1 cut(s)	377
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	2 cut(s)	325, 397
NlaIV	GGNNCC	4 cut(s)	49, 177, 378, 399
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	52
PciSI	GCTCTTC	2 cut(s)	155, 176
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	2 cut(s)	28, 201
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	2 cut(s)	28, 201
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	4 cut(s)	49, 177, 378, 399
PspPI	GGNCC	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	89, 218
RsaNI	GTAC	2 cut(s)	88, 217
SacI	GAGCTC	1 cut(s)	367
SalI	GTCGAC	1 cut(s)	80
SapI	GCTCTTC	2 cut(s)	155, 176
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	2 cut(s)	28, 202
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	50, 367
SetI	ASST	8 cut(s)	93, 107, 177, 188, 243, 264, 367, 436
SfaNI	GCATC	2 cut(s)	361, 378
SfcI	CTRYAG	1 cut(s)	429
SfoI	GGCGCC	1 cut(s)	378
SinI	GGWCC	1 cut(s)	250
SsiI	CCGC	2 cut(s)	118, 374
SspDI	GGCGCC	1 cut(s)	376
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	81, 169
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.