Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Reverse (-)

12237450 .. 12238415

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTATATCACTGGTGATTTTTCCATTGAGGCTCCTTGTTTTGTATTTGTGGACGAGATTGATGCTATTGCTAGAAGGGATGCAAGACATGATCCTAGAAGAAGAGCAACATTTGAGGCTTTGATTGCACAGCTCGATGGGGAGAAGGAAAAAACTAGTGTTGATCGCTTCTCTCTCAGACAAGCTGTCATATTCATCTATGCTACCAACATGCCAGATGAATTAGACCTTGAATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

80

Amino Acids

9.26

Weight (kDa)

4.59

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	10 - 77	2.8e-11	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	233
AhdI	GACNNNNNGTC	1 cut(s)	185
AhlI	ACTAGT	1 cut(s)	155
AluBI	AGCT	2 cut(s)	133, 185
AluI	AGCT	2 cut(s)	133, 185
AlwI	GGATC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	26
BccI	CCATC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	3 cut(s)	72, 96, 156
BmeRI	GACNNNNNGTC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	2 cut(s)	52, 70
Bse1I	ACTGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	91, 163
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	86
BspQI	GCTCTTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	16
BssMI	GATC	2 cut(s)	91, 163
Bst6I	CTCTTC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	94, 166
BstMBI	GATC	2 cut(s)	91, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	9
CviAII	CATG	2 cut(s)	89, 211
CviJI	RGCY	4 cut(s)	32, 119, 133, 185
CviKI_1	RGCY	4 cut(s)	32, 119, 133, 185
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	2 cut(s)	93, 165
DpnII	GATC	2 cut(s)	91, 163
DriI	GACNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	97
Eam1105I	GACNNNNNGTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	97
FaeI	CATG	2 cut(s)	92, 214
FaiI	YATR	5 cut(s)	6, 90, 191, 201, 212
FatI	CATG	2 cut(s)	88, 210
FokI	GGATG	1 cut(s)	92
FspBI	CTAG	3 cut(s)	72, 96, 156
Hin1II	CATG	2 cut(s)	92, 214
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	69, 139
HpyCH4V	TGCA	2 cut(s)	83, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	92, 214
Kzo9I	GATC	2 cut(s)	91, 163
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	1 cut(s)	228
LweI	GCATC	2 cut(s)	52, 70
MaeI	CTAG	3 cut(s)	72, 96, 156
MalI	GATC	2 cut(s)	93, 165
MboI	GATC	2 cut(s)	91, 163
MboII	GAAGA	2 cut(s)	111, 114
MluCI	AATT	2 cut(s)	221, 233
MnlI	CCTC	2 cut(s)	22, 109
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	2 cut(s)	91, 163
NlaIII	CATG	2 cut(s)	92, 214
NlaIV	GGNNCC	1 cut(s)	33
NspI	RCATGY	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	91, 163
SetI	ASST	3 cut(s)	135, 187, 231
SfaNI	GCATC	2 cut(s)	52, 70
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	2 cut(s)	221, 233
SspMI	CTAG	3 cut(s)	72, 96, 156
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	221, 233
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	184, 234
TspRI	CASTG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	3 cut(s)	72, 96, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.