Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006492.1

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Forward (+)

132481 .. 133829

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006492.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgtactgtgaaggaacacttagagcatcaggtagtgcacttaataaccaaggaagtgccctgcccacttcagatgttcaatcatcactacagaactctgctcccagcagctccttggttcagggatccactgtggccaaatgcttgttccagccttcgatttccaataccaccaattcttctgttcctcaaacacctccacgagcaaattcctctcaaagtgataaatctgtgtctcctgttgataattctggcatttttacccacagtgataacaattctcctcctgaaatcagtgctaattgctgcactatattttcatccaagagagtgacattgacccctaacaaagcttgctacactgtggaaacaaaccattgcatttcttcctcacctgccaagacaaactcgaggatctcaagtaggagggagcatgtaaaagggaggctaaactttgattgctctgatgtgccaatgggtttggacaaaccaattactgacgagatttcaactgacaaaccaatcattgaagatatatcaacccacaaaccaatcagagatgaaatttctacatctgattctgaaaaggaagttgatatttttgacatggatatgcccaattttgaagccctaggggtggattttaacttctctgacatgttaggtgaactagatcttgattatggagaacttggtttcacttgtcaaccatcttcgggtgctttcatgggaaatgtttcagggttatctcatgaaaatctggatggtaataagggggctaatcaagttatgtcagaattttcatcaactgtgacagaagtaatatcagagaagggcaccggtgcacaaggacctgattctatgacaacaatgaagtctgtaactaaatctatcagaattataagcccagtgaaaaagcgaggaaactctgtggatcaggagaactgtactgagataaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

34.23

Weight (kDa)

4.78

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	902
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	836
AclWI	GGATC	4 cut(s)	120, 133, 422, 942
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	3 cut(s)	208, 564, 797
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	5, 949
AfiI	CCNNNNNNNGG	2 cut(s)	637, 716
AflIII	ACRYGT	1 cut(s)	657
AgeI	ACCGGT	1 cut(s)	839
AgsI	TTSAA	4 cut(s)	80, 510, 530, 626
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	2 cut(s)	111, 353
AluI	AGCT	2 cut(s)	111, 353
Alw21I	GWGCWC	2 cut(s)	40, 847
Alw26I	GTCTC	1 cut(s)	240
Alw44I	GTGCAC	2 cut(s)	36, 843
AlwI	GGATC	4 cut(s)	120, 133, 422, 942
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	135
ApaLI	GTGCAC	2 cut(s)	36, 843
ApeKI	GCWGC	2 cut(s)	108, 306
ApoI	RAATTY	3 cut(s)	208, 564, 797
AsiGI	ACCGGT	1 cut(s)	839
Asp700I	GAANNNNTTC	1 cut(s)	736
AspA2I	CCTAGG	1 cut(s)	631
AspS9I	GGNCC	1 cut(s)	851
AsuHPI	GGTGA	2 cut(s)	384, 677
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	851
AvrII	CCTAGG	1 cut(s)	631
BaeGI	GKGCMC	4 cut(s)	40, 61, 839, 847
BalI	TGGCCA	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	836
BauI	CACGAG	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	40, 847
BbvI	GCAGC	2 cut(s)	120, 293
BccI	CCATC	2 cut(s)	718, 758
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	2 cut(s)	632, 671
BfmI	CTRYAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	403
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	2 cut(s)	109, 307
BlnI	CCTAGG	1 cut(s)	631
BlsI	GCNGC	2 cut(s)	110, 308
Bme18I	GGWCC	1 cut(s)	851
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	851
BmiI	GGNNCC	2 cut(s)	127, 838
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	902
BpuEI	CTTGAG	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	49, 114, 631
BsaWI	WCCGGW	1 cut(s)	839
Bsc4I	CCNNNNNNNGG	2 cut(s)	637, 716
Bse118I	RCCGGY	1 cut(s)	839
Bse1I	ACTGG	1 cut(s)	908
Bse3DI	GCAATG	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	49, 114, 631
BseGI	GGATG	2 cut(s)	320, 769
BseLI	CCNNNNNNNGG	2 cut(s)	637, 716
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	942
BseNI	ACTGG	1 cut(s)	908
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	4 cut(s)	40, 61, 839, 847
BseXI	GCAGC	2 cut(s)	120, 293
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	836
BshTI	ACCGGT	1 cut(s)	839
BsiHKAI	GWGCWC	2 cut(s)	40, 847
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	840
BslI	CCNNNNNNNGG	2 cut(s)	637, 716
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	4 cut(s)	40, 61, 839, 847
Bsp143I	GATC	4 cut(s)	125, 414, 673, 934
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	943
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	2 cut(s)	127, 838
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	4 cut(s)	120, 133, 422, 942
BspT107I	GGYRCC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	839
BsrI	ACTGG	1 cut(s)	908
BssAI	RCCGGY	1 cut(s)	839
BssECI	CCNNGG	3 cut(s)	49, 114, 631
BssMI	GATC	4 cut(s)	125, 414, 673, 934
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	3 cut(s)	49, 114, 631
Bst2BI	CACGAG	1 cut(s)	201
Bst4CI	ACNGT	6 cut(s)	8, 133, 269, 364, 811, 947
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	20, 951
BstF5I	GGATG	2 cut(s)	320, 769
BstKTI	GATC	4 cut(s)	128, 417, 676, 937
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	4 cut(s)	125, 414, 673, 934
BstNSI	RCATGY	2 cut(s)	437, 661
BstSFI	CTRYAG	1 cut(s)	89
BstSLI	GKGCMC	4 cut(s)	40, 61, 839, 847
BstV1I	GCAGC	2 cut(s)	120, 293
BstX2I	RGATCY	3 cut(s)	125, 414, 673
BstYI	RGATCY	3 cut(s)	125, 414, 673
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	320, 769
BtsIMutI	CAGTG	5 cut(s)	129, 274, 301, 360, 915
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	751
Cfr10I	RCCGGY	1 cut(s)	839
Cfr13I	GGNCC	1 cut(s)	851
Csp6I	GTAC	2 cut(s)	4, 948
CspAI	ACCGGT	1 cut(s)	839
CviAII	CATG	5 cut(s)	434, 607, 658, 727, 752
CviJI	RGCY	8 cut(s)	111, 137, 154, 353, 448, 629, 779, 906
CviKI_1	RGCY	8 cut(s)	111, 137, 154, 353, 448, 629, 779, 906
CviQI	GTAC	2 cut(s)	4, 948
DdeI	CTNAG	2 cut(s)	20, 951
DpnI	GATC	4 cut(s)	127, 416, 675, 936
DpnII	GATC	4 cut(s)	125, 414, 673, 934
EaeI	YGGCCR	1 cut(s)	135
Eco130I	CCWWGG	3 cut(s)	49, 114, 631
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	851
EcoT14I	CCWWGG	3 cut(s)	49, 114, 631
ErhI	CCWWGG	3 cut(s)	49, 114, 631
FaeI	CATG	5 cut(s)	437, 610, 661, 730, 755
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	5 cut(s)	433, 606, 657, 726, 751
Fnu4HI	GCNGC	2 cut(s)	109, 307
FokI	GGATG	2 cut(s)	307, 776
Fsp4HI	GCNGC	2 cut(s)	109, 307
FspBI	CTAG	2 cut(s)	632, 671
GluI	GCNGC	2 cut(s)	109, 307
GsaI	CCCAGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	840
Hin1II	CATG	5 cut(s)	437, 610, 661, 730, 755
HincII	GTYRAC	1 cut(s)	707
HindII	GTYRAC	1 cut(s)	707
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	2 cut(s)	578, 857
HpaII	CCGG	1 cut(s)	840
HphI	GGTGA	2 cut(s)	384, 677
Hpy166II	GTNNAC	4 cut(s)	38, 668, 707, 845
Hpy188I	TCNGA	9 cut(s)	73, 466, 557, 577, 583, 655, 796, 829, 896
Hpy188III	TCNNGA	5 cut(s)	287, 677, 752, 761, 938
Hpy8I	GTNNAC	4 cut(s)	38, 668, 707, 845
HpyAV	CCTTC	3 cut(s)	5, 165, 826
HpyCH4III	ACNGT	6 cut(s)	8, 133, 269, 364, 811, 947
HpyCH4V	TGCA	4 cut(s)	38, 309, 381, 845
HpyF3I	CTNAG	2 cut(s)	20, 951
Hsp92II	CATG	5 cut(s)	437, 610, 661, 730, 755
Kzo9I	GATC	4 cut(s)	125, 414, 673, 934
LmnI	GCTCC	3 cut(s)	106, 116, 430
Lsp1109I	GCAGC	2 cut(s)	120, 293
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	2 cut(s)	632, 671
MaeIII	GTNAC	3 cut(s)	331, 811, 880
MalI	GATC	4 cut(s)	127, 416, 675, 936
MboI	GATC	4 cut(s)	125, 414, 673, 934
MboII	GAAGA	4 cut(s)	171, 378, 542, 705
MflI	RGATCY	3 cut(s)	125, 414, 673
MhlI	GDGCHC	4 cut(s)	40, 61, 839, 847
MlsI	TGGCCA	1 cut(s)	137
MluNI	TGGCCA	1 cut(s)	137
MnlI	CCTC	9 cut(s)	198, 207, 223, 294, 400, 405, 420, 438, 914
Mox20I	TGGCCA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	736
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	2 cut(s)	42, 645
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	1 cut(s)	137
MspI	CCGG	1 cut(s)	840
NdeII	GATC	4 cut(s)	125, 414, 673, 934
NlaIII	CATG	5 cut(s)	437, 610, 661, 730, 755
NlaIV	GGNNCC	2 cut(s)	127, 838
NmuCI	GTSAC	2 cut(s)	331, 811
NspI	RCATGY	2 cut(s)	437, 661
PaeR7I	CTCGAG	1 cut(s)	409
PagI	TCATGA	1 cut(s)	751
PaqCI	CACCTGC	1 cut(s)	403
PciI	ACATGT	1 cut(s)	657
PdmI	GAANNNNTTC	1 cut(s)	736
PfeI	GAWTC	2 cut(s)	578, 857
PinAI	ACCGGT	1 cut(s)	839
PkrI	GCNGC	2 cut(s)	110, 308
PpuMI	RGGWCCY	1 cut(s)	851
PscI	ACATGT	1 cut(s)	657
PsiI	TTATAA	1 cut(s)	902
Psp5II	RGGWCCY	1 cut(s)	851
PspFI	CCCAGC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	127, 838
PspPI	GGNCC	1 cut(s)	851
PspPPI	RGGWCCY	1 cut(s)	851
PspXI	VCTCGAGB	1 cut(s)	409
PsuI	RGATCY	3 cut(s)	125, 414, 673
RsaI	GTAC	2 cut(s)	5, 949
RsaNI	GTAC	2 cut(s)	4, 948
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	2 cut(s)	42, 645
SatI	GCNGC	2 cut(s)	109, 307
Sau3AI	GATC	4 cut(s)	125, 414, 673, 934
Sau96I	GGNCC	1 cut(s)	851
SduI	GDGCHC	4 cut(s)	40, 61, 839, 847
SetI	ASST	7 cut(s)	34, 113, 199, 355, 397, 667, 856
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	89
Sfr274I	CTCGAG	1 cut(s)	409
SgrAI	CRCCGGYG	1 cut(s)	839
SinI	GGWCC	1 cut(s)	851
SlaI	CTCGAG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	409, 418
SmoI	CTYRAG	2 cut(s)	409, 418
SspMI	CTAG	2 cut(s)	632, 671
StyI	CCWWGG	3 cut(s)	49, 114, 631
TaaI	ACNGT	6 cut(s)	8, 133, 269, 364, 811, 947
TaqI	TCGA	2 cut(s)	158, 410
TatI	WGTACW	2 cut(s)	3, 947
TfiI	GAWTC	2 cut(s)	578, 857
Tru1I	TTAA	2 cut(s)	42, 645
Tru9I	TTAA	2 cut(s)	42, 645
TscAI	CASTG	5 cut(s)	136, 274, 301, 367, 915
TseFI	GTSAC	2 cut(s)	331, 811
TseI	GCWGC	2 cut(s)	108, 306
Tsp45I	GTSAC	2 cut(s)	331, 811
TspDTI	ATGAA	6 cut(s)	309, 576, 715, 768, 792, 887
TspRI	CASTG	5 cut(s)	136, 274, 301, 367, 915
VneI	GTGCAC	2 cut(s)	36, 843
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	3 cut(s)	208, 564, 797
XceI	RCATGY	2 cut(s)	437, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	409
XmaJI	CCTAGG	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	736
XspI	CTAG	2 cut(s)	632, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.