Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002081

Physical Location & Seq

Genomic Coordinates Forward (+)

8207507 .. 8207950

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g09900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGGAAGCCATCCAAAGGCAAGAAATCTGAGAATTTGGGGAAGGGAATGGTCACCCCCGTCCAAATCGCTTTCATCGTTGATCGATACCTATGCGACAACAACTACTTGGTAACCCGCTTTCTTTTTAGAACCGAAGCTTCGTCCCTCATTGCTAAATCACCGATTCAAGAGGCGCCAAAGAGTTTGCTAAGCGTGATGAACACTTACAATGTTGGCGGAAGCCCTGCAGTCTCTGCACCTCCGGCTATAGCTCTGAAGTCGATGCTTATGGCTACTCCGTCTCACCCGTTTAATGGATCTGCTGCAGGTGCAATCCTAAGCCTCCCCGTCTGGTTGTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.2

Weight (kDa)

9.78

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37960 AT2G37960 AT3G54060 AT3G54060
fragaria_vesca	FvH4_3g14760 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360 FvH4_6g12360
malus_domestica	MD04G1090200.v1.1 MD04G1143500.v1.1 MD12G1157700.v1.1
prunus_persica	Prupe.6G268000_v2.0.a1 Prupe.6G268000_v2.0.a1
pyrus_communis	pycom04g13020 pycom08g09900 pycom09g03010 pycom12g14980
rosa_chinensis	RchiOBHm_Chr1g0324481 RchiOBHm_Chr3g0464181 RchiOBHm_Chr5g0060551
rosa_laevigata	RLG00000003414 RLG00000014209 RLG00000017801 RLG00000024717 RLG00000030652 RLG00000030659
rosa_multiflora	Rmu_sc0001619.1_g000001 Rmu_sc0006492.1_g000022 Rmu_sc0032722.1_g000001 Rmu_sc0041392.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415950
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh1AG205500 Rh1DG068100 Rh3BG132400 Rh3CG134600 Rh3DG133600 Rh5BG170400 Rh6AG098500 Rh6CG247400 Rh6DG081300 Rh7CG209500
rosa_wichuraiana	Rw3G010830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	175
AciI	CCGC	2 cut(s)	118, 219
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	17, 296
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	2 cut(s)	140, 254
AluI	AGCT	2 cut(s)	140, 254
Alw26I	GTCTC	2 cut(s)	238, 288
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	178
AsuHPI	GGTGA	3 cut(s)	46, 153, 278
BanI	GGYRCC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	75, 109
BcoDI	GTCTC	2 cut(s)	238, 288
BfmI	CTRYAG	3 cut(s)	228, 249, 306
BfoI	RGCGCY	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	1 cut(s)	306
BlpI	GCTNAGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	320
Bpu1102I	GCTNAGC	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 296
Bse3DI	GCAATG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	85
BseGI	GGATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	17, 296
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	17, 296
BsmAI	GTCTC	2 cut(s)	238, 288
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	130
Bsp143I	GATC	2 cut(s)	82, 299
Bsp1720I	GCTNAGC	1 cut(s)	191
BspACI	CCGC	2 cut(s)	118, 219
BspCNI	CTCAG	1 cut(s)	22
BspDI	ATCGAT	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	2 cut(s)	232, 310
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	150
BssMI	GATC	2 cut(s)	82, 299
BssNI	GRCGYC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstDEI	CTNAG	4 cut(s)	30, 191, 320, 345
BstEII	GGTNACC	2 cut(s)	52, 112
BstF5I	GGATG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	85, 302
BstMAI	GTCTC	2 cut(s)	238, 288
BstMBI	GATC	2 cut(s)	82, 299
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 245, 311
BstPI	GGTNACC	2 cut(s)	52, 112
BstSFI	CTRYAG	3 cut(s)	228, 249, 306
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	85
BsuTUI	ATCGAT	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	11
BveI	ACCTGC	1 cut(s)	299
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	85
CviJI	RGCY	7 cut(s)	10, 140, 225, 248, 254, 275, 324
CviKI_1	RGCY	7 cut(s)	10, 140, 225, 248, 254, 275, 324
DdeI	CTNAG	4 cut(s)	30, 191, 320, 345
DinI	GGCGCC	1 cut(s)	177
DpnI	GATC	2 cut(s)	84, 301
DpnII	GATC	2 cut(s)	82, 299
EciI	GGCGGA	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	278
Eco91I	GGTNACC	2 cut(s)	52, 112
EcoO65I	GGTNACC	2 cut(s)	52, 112
EgeI	GGCGCC	1 cut(s)	177
EheI	GGCGCC	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	288
FaiI	YATR	3 cut(s)	94, 251, 272
FaqI	GGGAC	1 cut(s)	130
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	306
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	179
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	3 cut(s)	46, 153, 278
Hpy188I	TCNGA	2 cut(s)	31, 258
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	230, 239, 308, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 245, 311
HpyF3I	CTNAG	4 cut(s)	30, 191, 320, 345
Hsp92I	GRCGYC	1 cut(s)	176
HspAI	GCGC	1 cut(s)	176
KasI	GGCGCC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	82, 299
LpnPI	CCDG	4 cut(s)	240, 258, 294, 319
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	52, 112
MalI	GATC	2 cut(s)	84, 301
MboI	GATC	2 cut(s)	82, 299
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	1 cut(s)	34
Mly113I	GGCGCC	1 cut(s)	176
MnlI	CCTC	4 cut(s)	158, 166, 252, 335
MseI	TTAA	1 cut(s)	294
MspI	CCGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	236, 245, 311
NarI	GGCGCC	1 cut(s)	176
NdeII	GATC	2 cut(s)	82, 299
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	52
PaqCI	CACCTGC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	307
PluTI	GGCGCC	1 cut(s)	179
PspEI	GGTNACC	2 cut(s)	52, 112
PspN4I	GGNNCC	1 cut(s)	177
PstI	CTGCAG	2 cut(s)	232, 310
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	82, 299
SetI	ASST	5 cut(s)	93, 142, 244, 256, 313
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	3 cut(s)	228, 249, 306
SfoI	GGCGCC	1 cut(s)	177
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	2 cut(s)	118, 219
SspDI	GGCGCC	1 cut(s)	175
TaqI	TCGA	2 cut(s)	85, 263
TasI	AATT	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	64, 215
TspGWI	ACGGA	1 cut(s)	270
XapI	RAATTY	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.