Rh1AG205500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002081
Physical Location & Seq
Forward (+)
38933852 .. 38934416
565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG205500.1

Sequence Viewer

Length: 366 bp
ATGGCGAAGCAATCTGAAGCCAGAAATCAGAGAATCTGGGCCAGGGCACCTCATCCAGATAGCCTTCCTCGTCGACCAGTGTCAAAGAGCTTACCGAGTTTGTCTGAGATTCTGATCAAGTACATAGCATTGAAGGAGCAGAAAGTGTTGGACTATGAGAAGGTTCAGGTGGAGCAAGAGAAGACCAGGGTTCAGAAGTTGTTGAATGGGTTGCAGAACTCGATAAACATTTACAATGCCAGTGGAAACCCCCAAATCTCCAAAGTTTTGGATGCGGCACCGAAACAGATGCACATGGCTCCTCAGTCTCGCCTATCTAATGGGTCTTCTATAGGTACAATCCTAACCCCATCTGCTTGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.48

Weight (kDa)

9.94

Isoelectric Point (pI)

68.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 46, 277
AccI GTMKAC 1 cut(s) 73
AciI CCGC 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 122, 337
AgsI TTSAA 2 cut(s) 133, 205
AjnI CCWGG 2 cut(s) 41, 185
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 312
AoxI GGCC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 49
BanI GGYRCC 2 cut(s) 46, 277
BbsI GAAGAC 2 cut(s) 188, 318
BccI CCATC 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciT130I CCWGG 2 cut(s) 43, 187
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 2 cut(s) 43, 187
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 3 cut(s) 48, 279, 300
BmrFI CCNGG 2 cut(s) 43, 187
BmsI GCATC 2 cut(s) 262, 279
BoxI GACNNNNGTC 1 cut(s) 79
BpiI GAAGAC 2 cut(s) 188, 318
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 42, 186
Bse1I ACTGG 2 cut(s) 77, 240
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 2 cut(s) 43, 187
BseDI CCNNGG 2 cut(s) 42, 186
BseGI GGATG 2 cut(s) 52, 277
BseJI GATNNNNATC 1 cut(s) 113
BseMII CTCAG 2 cut(s) 96, 317
BseNI ACTGG 2 cut(s) 77, 240
BseRI GAGGAG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 49
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 2 cut(s) 46, 277
BsmAI GTCTC 1 cut(s) 312
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 1 cut(s) 275
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 2 cut(s) 97, 316
BspLI GGNNCC 3 cut(s) 48, 279, 300
BspT107I GGYRCC 2 cut(s) 46, 277
BsrI ACTGG 2 cut(s) 77, 240
BssECI CCNNGG 2 cut(s) 42, 186
BssMI GATC 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 43, 187
BstDEI CTNAG 2 cut(s) 105, 303
BstF5I GGATG 2 cut(s) 52, 277
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 1 cut(s) 114
BstNI CCWGG 2 cut(s) 43, 187
BstPAI GACNNNNGTC 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 41, 185
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 49
BstV2I GAAGAC 2 cut(s) 188, 318
BstXI CCANNNNNNTGG 1 cut(s) 268
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 2 cut(s) 52, 277
BtsIMutI CAGTG 2 cut(s) 84, 247
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 121, 336
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 1 cut(s) 295
CviJI RGCY 5 cut(s) 20, 41, 63, 90, 299
CviKI_1 RGCY 5 cut(s) 20, 41, 63, 90, 299
CviQI GTAC 2 cut(s) 121, 336
DdeI CTNAG 2 cut(s) 105, 303
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 41, 185
FaeI CATG 1 cut(s) 298
FaiI YATR 5 cut(s) 125, 156, 296, 332, 362
FatI CATG 1 cut(s) 294
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 2 cut(s) 39, 284
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 41
Hin1II CATG 1 cut(s) 298
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HinfI GANTC 2 cut(s) 33, 109
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 5 cut(s) 16, 30, 106, 114, 195
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 3 cut(s) 74, 127, 154
HpyCH4V TGCA 2 cut(s) 214, 292
HpyF3I CTNAG 2 cut(s) 105, 303
Hsp92II CATG 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 3 cut(s) 136, 172, 304
LweI GCATC 2 cut(s) 262, 279
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 2 cut(s) 193, 318
MhlI GDGCHC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 3 cut(s) 60, 78, 312
MspR9I CCNGG 2 cut(s) 43, 187
MvaI CCWGG 2 cut(s) 43, 187
NdeII GATC 1 cut(s) 114
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 3 cut(s) 48, 279, 300
PfeI GAWTC 2 cut(s) 33, 109
PkrI GCNGC 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 41, 185
PspGI CCWGG 2 cut(s) 41, 185
PspN4I GGNNCC 3 cut(s) 48, 279, 300
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 2 cut(s) 122, 337
RsaNI GTAC 2 cut(s) 121, 336
SalI GTCGAC 1 cut(s) 72
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 43, 187
SduI GDGCHC 1 cut(s) 49
SetI ASST 5 cut(s) 52, 92, 165, 171, 337
SfaNI GCATC 2 cut(s) 262, 279
SfcI CTRYAG 1 cut(s) 330
SsiI CCGC 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 41, 185
TaqI TCGA 2 cut(s) 73, 221
TatI WGTACW 1 cut(s) 120
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 2 cut(s) 33, 109
TscAI CASTG 2 cut(s) 84, 247
TspRI CASTG 2 cut(s) 84, 247
XmiI GTMKAC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.