Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Reverse (-)

16450554 .. 16451878

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGAGAATCAAGGTTCATGAGCTGAGGGAGAAATCAAAAGCTGATCTTTCGGGTCAGTTGAAGGAATTTAAGGCAGAGCTTGCTCTCCTTCGTGTCGCTAAGGTCACTGGAGGTGCTCCTAATAAGCTCTCTAAGATCAAGGTGGTGAGGAAGTCGATTGCTCAGGTGTTGACAGTGATCTCACAGAAACAAAAGTCTGCTTTGAGAGAGGCATACAAGAACAAGAAGCTTTTGCCTCTTGATCTTCGTCCCAAGAAGACTAGAGCCATCAGGAGGAGACTCACTAAGCATCAGGCATCGTTGAAGACAGAGAGGGAGAAGAAGAAAGAAATGTACTTTCCAATAAGGAAGTATGCTATTAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

10.92

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L29	PF00831	8 - 64	3.9e-19	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	64, 307
AluBI	AGCT	5 cut(s)	25, 44, 82, 130, 232
AluI	AGCT	5 cut(s)	25, 44, 82, 130, 232
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	160
BbsI	GAAGAC	2 cut(s)	266, 314
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	301, 308
BpiI	GAAGAC	2 cut(s)	266, 314
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	3 cut(s)	26, 102, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	17, 179
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	46, 138, 180, 244
BspCNI	CTCAG	2 cut(s)	18, 178
BspHI	TCATGA	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	115
BssMI	GATC	4 cut(s)	46, 138, 180, 244
Bst4CI	ACNGT	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	5 cut(s)	26, 102, 135, 165, 288
BstKTI	GATC	4 cut(s)	49, 141, 183, 247
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	4 cut(s)	46, 138, 180, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstV2I	GAAGAC	2 cut(s)	266, 314
BtsIMutI	CAGTG	2 cut(s)	108, 183
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	6 cut(s)	25, 44, 82, 130, 232, 269
CviKI_1	RGCY	6 cut(s)	25, 44, 82, 130, 232, 269
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	5 cut(s)	26, 102, 135, 165, 288
DpnI	GATC	4 cut(s)	48, 140, 182, 246
DpnII	GATC	4 cut(s)	46, 138, 180, 244
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	21, 217, 357
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	1 cut(s)	19
FspBI	CTAG	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	132
Hin1II	CATG	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	9, 282
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188III	TCNNGA	3 cut(s)	20, 242, 274
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	2 cut(s)	58, 101
HpyCH4III	ACNGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	5 cut(s)	26, 102, 135, 165, 288
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	4 cut(s)	46, 138, 180, 244
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	4 cut(s)	96, 152, 259, 281
LweI	GCATC	2 cut(s)	301, 308
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	48, 140, 182, 246
MboI	GATC	4 cut(s)	46, 138, 180, 244
MboII	GAAGA	5 cut(s)	239, 271, 319, 334, 337
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	7 cut(s)	21, 107, 144, 205, 249, 270, 309
MseI	TTAA	2 cut(s)	72, 363
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	4 cut(s)	46, 138, 180, 244
NlaIII	CATG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	106
PagI	TCATGA	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	72, 363
Sau3AI	GATC	4 cut(s)	46, 138, 180, 244
SchI	GAGTC	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	2 cut(s)	301, 308
Sse9I	AATT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	158
TasI	AATT	1 cut(s)	68
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	72, 363
Tru9I	TTAA	2 cut(s)	72, 363
TscAI	CASTG	2 cut(s)	115, 183
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	8
TspRI	CASTG	2 cut(s)	115, 183
XapI	RAATTY	1 cut(s)	68
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.