Rh5CG302300

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002234
Physical Location & Seq
Reverse (-)
33244082 .. 33259497
15416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG302300.1

Sequence Viewer

Length: 309 bp
ATGGCCAGAATCAAGGTACACGAGCTCAGGCAGAAGTCGAAGGCCGATCTTTTGGCCAAGTTCAAGGATCTCAAGGTGGAGCTCGCCCTCCTCCACGTCGCCAAGGTCACCGGTGGAGCACCCAATAGGCTGTCCAAGATTGGCTGCAGACTTATAGGGCAGCGAGCCAGCAACAATAACTGCTTTTCATCTGAAGCACTGAAGAAGCATACAAATAGAGTTTTACTGGATCGAAACCCTAATCTTAAATCGACTTTACTTCCCTTTCCTCGATCGAAGTTTGAAAATTTACCTTGCTTTGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L29

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

10.3

Isoelectric Point (pI)

18.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L29 PF00831 8 - 47 1.1e-06 Ribosomal L29 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 75, 237
AcoI YGGCCR 2 cut(s) 3, 54
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 2 cut(s) 213, 221
AfaI GTAC 1 cut(s) 18
AgeI ACCGGT 1 cut(s) 110
AgsI TTSAA 2 cut(s) 64, 284
AjiI CACGTC 1 cut(s) 97
AluBI AGCT 2 cut(s) 25, 82
AluI AGCT 2 cut(s) 25, 82
Alw21I GWGCWC 3 cut(s) 27, 84, 121
AlwI GGATC 2 cut(s) 75, 237
AoxI GGCC 3 cut(s) 3, 42, 54
ApeKI GCWGC 2 cut(s) 144, 160
ApoI RAATTY 1 cut(s) 286
AsiGI ACCGGT 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 100
BalI TGGCCA 2 cut(s) 5, 56
BanII GRGCYC 2 cut(s) 27, 84
BauI CACGAG 1 cut(s) 20
Bbv12I GWGCWC 3 cut(s) 27, 84, 121
BbvI GCAGC 2 cut(s) 131, 172
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 2 cut(s) 145, 161
BlsI GCNGC 2 cut(s) 146, 162
BmgBI CACGTC 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 2 cut(s) 131, 172
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 3 cut(s) 5, 44, 56
BshTI ACCGGT 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 275
BsiHKAI GWGCWC 3 cut(s) 27, 84, 121
BsiSI CCGG 1 cut(s) 111
BsnI GGCC 3 cut(s) 5, 44, 56
Bsp1286I GDGCHC 3 cut(s) 27, 84, 121
Bsp143I GATC 4 cut(s) 46, 67, 229, 272
BspANI GGCC 3 cut(s) 5, 44, 56
BspCNI CTCAG 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 149
BspPI GGATC 2 cut(s) 75, 237
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 231
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 4 cut(s) 46, 67, 229, 272
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 84, 165, 169
BstDEI CTNAG 1 cut(s) 26
BstEII GGTNACC 1 cut(s) 106
BstKTI GATC 4 cut(s) 49, 70, 232, 275
BstMBI GATC 4 cut(s) 46, 67, 229, 272
BstMCI CGRYCG 1 cut(s) 275
BstPI GGTNACC 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 131, 172
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 3 cut(s) 5, 44, 56
BtrI CACGTC 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 197
Cac8I GCNNGC 3 cut(s) 84, 165, 169
Cfr10I RCCGGY 1 cut(s) 110
Csp6I GTAC 1 cut(s) 17
CspAI ACCGGT 1 cut(s) 110
CviJI RGCY 8 cut(s) 5, 25, 44, 56, 82, 130, 144, 167
CviKI_1 RGCY 8 cut(s) 5, 25, 44, 56, 82, 130, 144, 167
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 26
DpnI GATC 4 cut(s) 48, 69, 231, 274
DpnII GATC 4 cut(s) 46, 67, 229, 272
EaeI YGGCCR 2 cut(s) 3, 54
Ecl136II GAGCTC 2 cut(s) 25, 82
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 2 cut(s) 27, 84
Eco53kI GAGCTC 2 cut(s) 25, 82
Eco57I CTGAAG 2 cut(s) 213, 221
Eco91I GGTNACC 1 cut(s) 106
EcoICRI GAGCTC 2 cut(s) 25, 82
EcoO65I GGTNACC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 27, 84
ErhI CCWWGG 1 cut(s) 102
FaiI YATR 2 cut(s) 155, 210
Fnu4HI GCNGC 2 cut(s) 145, 161
FriOI GRGCYC 2 cut(s) 27, 84
Fsp4HI GCNGC 2 cut(s) 145, 161
GluI GCNGC 2 cut(s) 145, 161
HaeIII GGCC 3 cut(s) 5, 44, 56
HapII CCGG 1 cut(s) 111
HinfI GANTC 1 cut(s) 9
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 147, 302
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 96
Kzo9I GATC 4 cut(s) 46, 67, 229, 272
LmnI GCTCC 2 cut(s) 79, 116
LpnPI CCDG 5 cut(s) 13, 19, 124, 181, 212
Lsp1109I GCAGC 2 cut(s) 131, 172
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 106
MalI GATC 4 cut(s) 48, 69, 231, 274
MboI GATC 4 cut(s) 46, 67, 229, 272
MboII GAAGA 1 cut(s) 214
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 3 cut(s) 27, 84, 121
MlsI TGGCCA 2 cut(s) 5, 56
MluCI AATT 1 cut(s) 286
MluNI TGGCCA 2 cut(s) 5, 56
MnlI CCTC 3 cut(s) 98, 101, 279
Mox20I TGGCCA 2 cut(s) 5, 56
MscI TGGCCA 2 cut(s) 5, 56
MseI TTAA 1 cut(s) 246
Msp20I TGGCCA 2 cut(s) 5, 56
MspI CCGG 1 cut(s) 111
NdeII GATC 4 cut(s) 46, 67, 229, 272
NmuCI GTSAC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 9
PinAI ACCGGT 1 cut(s) 110
PkrI GCNGC 2 cut(s) 146, 162
Ple19I CGATCG 1 cut(s) 275
Psp124BI GAGCTC 2 cut(s) 27, 84
PspEI GGTNACC 1 cut(s) 106
PstI CTGCAG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 67
PvuI CGATCG 1 cut(s) 275
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SacI GAGCTC 2 cut(s) 27, 84
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 145, 161
Sau3AI GATC 4 cut(s) 46, 67, 229, 272
SduI GDGCHC 3 cut(s) 27, 84, 121
SetI ASST 7 cut(s) 18, 27, 78, 84, 99, 108, 295
SfcI CTRYAG 1 cut(s) 145
SgrAI CRCCGGYG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 286
SstI GAGCTC 2 cut(s) 27, 84
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 1 cut(s) 99
TaqI TCGA 5 cut(s) 38, 232, 251, 271, 275
TasI AATT 1 cut(s) 286
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 144, 160
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 204
XapI RAATTY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.