Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Reverse (-)

20417075 .. 20417642

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGGCTTCAAAGCGGCCACCGCTACTCAAAATTTAGGGTTTCATTTTCCCGTCAAGCTAGAGAGAAGGAGCCGCCGTTGCAGAACTCGCACGCACGCACCAGCAATGGCGAGAATCAAGGTACATGAGCTGAGGCACAAGACAAAGGTTGACCTTTTGGCTCAGCTCAAGGATCGATCAAGGCGGAGCTCGCCCTCCTCCGCGTCGCTAAGGTCACCGGCGGAGCGCCCAACAAGCTCTCCAAGATCAAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

86

Amino Acids

9.69

Weight (kDa)

12.0

Isoelectric Point (pI)

99.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AciI	CCGC	6 cut(s)	14, 21, 73, 184, 201, 221
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	5 cut(s)	58, 130, 166, 189, 237
AluI	AGCT	5 cut(s)	58, 130, 166, 189, 237
Alw21I	GWGCWC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	180
AoxI	GGCC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	2 cut(s)	15, 73
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	2 cut(s)	16, 74
BmiI	GGNNCC	1 cut(s)	71
Bpu10I	CCTNAGC	2 cut(s)	131, 209
Bpu1102I	GCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	175
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 223, 253
Bse118I	RCCGGY	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	111
BseCI	ATCGAT	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	122, 176
BseRI	GAGGAG	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	218
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	172, 176, 245
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	6 cut(s)	14, 21, 73, 184, 201, 221
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	123, 175
BspDI	ATCGAT	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	217
BssMI	GATC	3 cut(s)	172, 176, 245
BstC8I	GCNNGC	3 cut(s)	92, 96, 191
BstDEI	CTNAG	3 cut(s)	131, 162, 209
BstEII	GGTNACC	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	3 cut(s)	175, 179, 248
BstMBI	GATC	3 cut(s)	172, 176, 245
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 78, 87, 190, 234
BstPI	GGTNACC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	175
Cac8I	GCNNGC	3 cut(s)	92, 96, 191
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	175
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	9 cut(s)	6, 17, 58, 72, 130, 161, 166, 189, 237
CviKI_1	RGCY	9 cut(s)	6, 17, 58, 72, 130, 161, 166, 189, 237
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	3 cut(s)	131, 162, 209
DpnI	GATC	3 cut(s)	174, 178, 247
DpnII	GATC	3 cut(s)	172, 176, 245
EaeI	YGGCCR	1 cut(s)	15
EciI	GGCGGA	2 cut(s)	199, 236
Ecl136II	GAGCTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	189
Eco91I	GGTNACC	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	189
EcoO65I	GGTNACC	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	1 cut(s)	128
FaiI	YATR	1 cut(s)	126
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	15, 73
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	15, 73
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	15, 73
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 78, 87, 190, 234
HpyF3I	CTNAG	3 cut(s)	131, 162, 209
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	172, 176, 245
LmnI	GCTCC	3 cut(s)	69, 186, 223
LpnPI	CCDG	2 cut(s)	114, 231
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	3 cut(s)	174, 178, 247
MboI	GATC	3 cut(s)	172, 176, 245
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	3 cut(s)	126, 205, 208
MspI	CCGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	5 cut(s)	20, 78, 87, 190, 234
NdeII	GATC	3 cut(s)	172, 176, 245
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	16, 74
Psp124BI	GAGCTC	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	191
SatI	GCNGC	2 cut(s)	15, 73
Sau3AI	GATC	3 cut(s)	172, 176, 245
SduI	GDGCHC	1 cut(s)	191
SgrAI	CRCCGGYG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	6 cut(s)	14, 21, 73, 184, 201, 221
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	191
TaqI	TCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	31
TauI	GCSGC	2 cut(s)	17, 75
TfiI	GAWTC	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	1 cut(s)	32
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.