RchiOBHm_Chr2g0098001

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002234
Physical Location & Seq
Forward (+)
10472787 .. 10473079
293 bp
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UTR
Exon/CDS
Intron
PRQ47282

Sequence Viewer

Length: 291 bp
ATGGCGAGGATCAAGGTCCACGAGCTCAGGAACAAGTCCAAGGCAGATCTTTTGGGTCAGCTCAAGGATCTGAAGGCGGAGCTCGCTCTTCTCCGAGTCGCCAAGGTCACTGGTGGAGCCCCCAACAAGCTCTCCAAAATCAAGGTGGTGAGGCTTTCAATAGCTCAGGTGCTGACAGTGATTTCCCAGAAGCAAAAGGCGGCTCTGTTAAACAGCGACAAGCGTGGCCCGTGGCCCACCATTGTACCGATATTGTCCCAACTTAACCACCCGATAGGTGTTGGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L29

Protein Analysis

96

Amino Acids

10.45

Weight (kDa)

10.89

Isoelectric Point (pI)

22.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L29 PF00831 8 - 64 3.4e-18 Ribosomal L29 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 200
AclWI GGATC 2 cut(s) 17, 75
AcuI CTGAAG 1 cut(s) 92
AfaI GTAC 1 cut(s) 246
AgsI TTSAA 1 cut(s) 159
AluBI AGCT 5 cut(s) 25, 61, 82, 130, 164
AluI AGCT 5 cut(s) 25, 61, 82, 130, 164
Alw21I GWGCWC 2 cut(s) 27, 84
AlwI GGATC 2 cut(s) 17, 75
AlwNI CAGNNNCTG 1 cut(s) 172
AoxI GGCC 2 cut(s) 226, 233
AspS9I GGNCC 3 cut(s) 16, 227, 234
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 16
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BanII GRGCYC 3 cut(s) 27, 84, 121
BauI CACGAG 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 27, 84
BglII AGATCT 1 cut(s) 46
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 3 cut(s) 16, 227, 234
BmiI GGNNCC 1 cut(s) 118
Bpu10I CCTNAGC 2 cut(s) 26, 165
BpuEI CTTGAG 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 39, 102, 230
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse1I ACTGG 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 39, 102, 230
BseMII CTCAG 2 cut(s) 40, 179
BseNI ACTGG 1 cut(s) 115
BshFI GGCC 2 cut(s) 228, 235
BsiHKAI GWGCWC 2 cut(s) 27, 84
BslFI GGGAC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 2 cut(s) 228, 235
Bsp1286I GDGCHC 3 cut(s) 27, 84, 121
Bsp143I GATC 3 cut(s) 9, 46, 67
BspACI CCGC 2 cut(s) 77, 200
BspANI GGCC 2 cut(s) 228, 235
BspCNI CTCAG 2 cut(s) 39, 178
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 2 cut(s) 17, 75
BspQI GCTCTTC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 3 cut(s) 39, 102, 230
BssMI GATC 3 cut(s) 9, 46, 67
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 2 cut(s) 39, 102
Bst2BI CACGAG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 26, 165
BstDSI CCRYGG 1 cut(s) 230
BstKTI GATC 3 cut(s) 12, 49, 70
BstMBI GATC 3 cut(s) 9, 46, 67
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 46, 67
BstYI RGATCY 2 cut(s) 46, 67
BsuRI GGCC 2 cut(s) 228, 235
BtgI CCRYGG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 108, 183
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 16, 227, 234
Csp6I GTAC 1 cut(s) 245
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 2 cut(s) 26, 165
DpnI GATC 3 cut(s) 11, 48, 69
DpnII GATC 3 cut(s) 9, 46, 67
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 2 cut(s) 25, 82
Eco130I CCWWGG 2 cut(s) 39, 102
Eco24I GRGCYC 3 cut(s) 27, 84, 121
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 2 cut(s) 25, 82
Eco57I CTGAAG 1 cut(s) 92
EcoICRI GAGCTC 2 cut(s) 25, 82
EcoT14I CCWWGG 2 cut(s) 39, 102
EcoT38I GRGCYC 3 cut(s) 27, 84, 121
ErhI CCWWGG 2 cut(s) 39, 102
FaqI GGGAC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 201
FriOI GRGCYC 3 cut(s) 27, 84, 121
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 228, 235
HinfI GANTC 1 cut(s) 96
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 72, 95
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 26, 165
Kzo9I GATC 3 cut(s) 9, 46, 67
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 79, 116
LpnPI CCDG 4 cut(s) 13, 96, 152, 200
MaeIII GTNAC 1 cut(s) 106
MalI GATC 3 cut(s) 11, 48, 69
MboI GATC 3 cut(s) 9, 46, 67
MboII GAAGA 1 cut(s) 80
MflI RGATCY 2 cut(s) 46, 67
MhlI GDGCHC 3 cut(s) 27, 84, 121
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 1 cut(s) 144
MseI TTAA 3 cut(s) 209, 264, 289
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 3 cut(s) 9, 46, 67
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp124BI GAGCTC 2 cut(s) 27, 84
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 3 cut(s) 16, 227, 234
PstNI CAGNNNCTG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 46, 67
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SacI GAGCTC 2 cut(s) 27, 84
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 3 cut(s) 209, 264, 289
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 3 cut(s) 9, 46, 67
Sau96I GGNCC 3 cut(s) 16, 227, 234
SchI GAGTC 1 cut(s) 105
SduI GDGCHC 3 cut(s) 27, 84, 121
SinI GGWCC 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SsiI CCGC 2 cut(s) 77, 200
SstI GAGCTC 2 cut(s) 27, 84
StyI CCWWGG 2 cut(s) 39, 102
TaaI ACNGT 1 cut(s) 178
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 3 cut(s) 209, 264, 289
Tru9I TTAA 3 cut(s) 209, 264, 289
TscAI CASTG 2 cut(s) 115, 183
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspRI CASTG 2 cut(s) 115, 183
VpaK11BI GGWCC 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.