Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Reverse (-)

20452910 .. 20454530

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAGAATTGAAGGCAGAGCTTGCTTCCCTACGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTCTCTAAGATCAAAGTGGTGAGGAAGTCGATTGCGCAAGTGTTGACTGTGAGCTCACAGAAACAAAAGTCTGCTCTTAGAGAAGCATACAAAAACAAGAAGTTGTTGCCACTCGATCTCCGTCCCAAGAAGACTAGAGCCATCAGAAGGAGACTCACTAAACACCAGGCGTCGCTGAAGACAGAACGAGAGAAGAAGAAAGACATGTACTTTCCAATTAGAAAGTATGCCATCAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

123

Amino Acids

14.18

Weight (kDa)

10.92

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L29	PF00831	8 - 64	1.2e-19	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	165
AclWI	GGATC	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflIII	ACRYGT	2 cut(s)	94, 333
AgsI	TTSAA	2 cut(s)	64, 73
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	82, 130, 183
AluI	AGCT	3 cut(s)	82, 130, 183
Alw21I	GWGCWC	2 cut(s)	121, 185
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	185
BbsI	GAAGAC	2 cut(s)	266, 314
Bbv12I	GWGCWC	2 cut(s)	121, 185
BccI	CCATC	2 cut(s)	278, 368
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	296
BpiI	GAAGAC	2 cut(s)	266, 314
Bpu10I	CCTNAGC	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	121, 185
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	121, 185
Bsp143I	GATC	3 cut(s)	46, 138, 244
BspHI	TCATGA	1 cut(s)	19
BspPI	GGATC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	115
BssMI	GATC	3 cut(s)	46, 138, 244
BssNI	GRCGYC	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	102, 135, 206
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	49, 141, 247
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	3 cut(s)	46, 138, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	294
BstV2I	GAAGAC	2 cut(s)	266, 314
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	166
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	20, 334
CviJI	RGCY	4 cut(s)	82, 130, 183, 269
CviKI_1	RGCY	4 cut(s)	82, 130, 183, 269
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	3 cut(s)	102, 135, 206
DpnI	GATC	3 cut(s)	48, 140, 246
DpnII	GATC	3 cut(s)	46, 138, 244
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	185
FaeI	CATG	2 cut(s)	23, 337
FaiI	YATR	4 cut(s)	21, 217, 335, 357
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	2 cut(s)	19, 333
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	264
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	1 cut(s)	165
HgaI	GACGC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	23, 337
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	9, 282
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	46, 275
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	67, 270
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	3 cut(s)	102, 135, 206
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	23, 337
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	46, 138, 244
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	3 cut(s)	96, 281, 308
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	3 cut(s)	48, 140, 246
MboI	GATC	3 cut(s)	46, 138, 244
MboII	GAAGA	4 cut(s)	271, 319, 334, 337
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	121, 185
MluCI	AATT	3 cut(s)	59, 68, 345
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	1 cut(s)	144
MseI	TTAA	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	3 cut(s)	46, 138, 244
NlaIII	CATG	2 cut(s)	23, 337
NmuCI	GTSAC	1 cut(s)	106
NsbI	TGCGCA	1 cut(s)	165
NspI	RCATGY	1 cut(s)	337
PagI	TCATGA	1 cut(s)	19
PciI	ACATGT	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	95
PscI	ACATGT	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	370
Sau3AI	GATC	3 cut(s)	46, 138, 244
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	121, 185
SetI	ASST	6 cut(s)	18, 84, 97, 108, 132, 185
Sse9I	AATT	3 cut(s)	59, 68, 345
SspMI	CTAG	1 cut(s)	264
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	158, 243
TasI	AATT	3 cut(s)	59, 68, 345
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	370
Tru9I	TTAA	1 cut(s)	370
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	8
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	115
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.