Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Forward (+)

587392 .. 588859

Gene Structure 1468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGAGAATTAAGGTTCATGAGCTTAGAGATAAATCAAAGACCGATCTTCAGAATCAGTTGAAGGAATTCAAGGCTGAACTCGCTCTCCTCCGTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAATCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAGCAGAAATCTGCTTTAAGAGAGGCATACAAGAACAAGAAGCTCTTGCCTCTTGATCTCCGTCCCAAGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGGCTTCGTTGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAGTGAGGAAGTACGCTATCAAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

123

Amino Acids

14.33

Weight (kDa)

10.92

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L29	PF00831	8 - 48	9.4e-10	Ribosomal L29 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	283
AccI	GTMKAC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	280
AfaI	GTAC	1 cut(s)	356
AgsI	TTSAA	3 cut(s)	64, 73, 307
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	4 cut(s)	25, 130, 232, 269
AluI	AGCT	4 cut(s)	25, 130, 232, 269
Alw26I	GTCTC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	100, 277
BauI	CACGAG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	287
BfoI	RGCGCY	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 116, 146
Bse1I	ACTGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	287
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	46, 180, 244
BspCNI	CTCAG	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	344
BssMI	GATC	3 cut(s)	46, 180, 244
BssNI	GRCGYC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	26, 165
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	3 cut(s)	49, 183, 247
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	3 cut(s)	46, 180, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	314
BtsIMutI	CAGTG	2 cut(s)	183, 351
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	6 cut(s)	25, 77, 130, 232, 269, 299
CviKI_1	RGCY	6 cut(s)	25, 77, 130, 232, 269, 299
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	26, 165
DpnI	GATC	3 cut(s)	48, 182, 246
DpnII	GATC	3 cut(s)	46, 180, 244
Eco57I	CTGAAG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	1 cut(s)	23
FaiI	YATR	2 cut(s)	21, 217
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	277
GlaI	GCGC	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	120
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	100, 277
Hpy166II	GTNNAC	2 cut(s)	174, 278
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	20, 242
Hpy8I	GTNNAC	2 cut(s)	174, 278
HpyAV	CCTTC	2 cut(s)	58, 322
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	2 cut(s)	26, 165
HpySE526I	ACGT	1 cut(s)	280
Hsp92I	GRCGYC	1 cut(s)	280
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	46, 180, 244
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	5 cut(s)	124, 152, 200, 281, 357
LweI	GCATC	1 cut(s)	301
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	3 cut(s)	48, 182, 246
MboI	GATC	3 cut(s)	46, 180, 244
MboII	GAAGA	4 cut(s)	41, 319, 334, 337
MluCI	AATT	2 cut(s)	9, 68
MnlI	CCTC	6 cut(s)	101, 107, 144, 205, 249, 342
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	12, 206
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	3 cut(s)	46, 180, 244
NlaIII	CATG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	106
PagI	TCATGA	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	12, 206
Sau3AI	GATC	3 cut(s)	46, 180, 244
SetI	ASST	8 cut(s)	18, 27, 132, 147, 171, 234, 271, 283
SfaNI	GCATC	1 cut(s)	301
Sse9I	AATT	2 cut(s)	9, 68
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	283
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	2 cut(s)	9, 68
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	12, 206
Tru9I	TTAA	2 cut(s)	12, 206
TscAI	CASTG	2 cut(s)	183, 351
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	8
TspGWI	ACGGA	3 cut(s)	83, 239, 263
TspRI	CASTG	2 cut(s)	183, 351
XapI	RAATTY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	68
ZraI	GACGTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.