Prupe.2G139200_v2.0.a1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0002234
Physical Location & Seq
Reverse (-)
19648136 .. 19649607
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G139200.1

Sequence Viewer

Length: 411 bp
ATGGTGAGGATCAAGGTCCACGAGCTCAGAAACAAGACAAAGGCAGAGCTTTTGGGTCAACTGAAGGATCTGAAGGCAGAACTTGCCCTCCTCCGAGTCACCAAGGTCACCTGCGGAGCCCCCCAACAATCTCTCCAAAATCAAGGTGGTGAGGCTTTCAATAGCATAGGTGTTGACAATGATTTCCCAAAAAGCTGCTCTAAGATAAGTCTACAAGAACAAGAAGTTTCTTCCACTAGATTTGCGCCCAAAGAAGACCAGGGCCATCAAAAGGCGTCTGACCAAGCATCAGGCATCTTTAAAGACATAAAGGGAGAGGAAGAAGAATATGTACTTTCAATTGAGGAAGTTTGCAATCGAAGCATAATGTTGGATCCAATTATGAAGGAAATCATGGCATTTCGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000463 GO:0000470 GO:0000956 GO:0002181 GO:0002262 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009628 GO:0009790 GO:0009792 GO:0009892 GO:0009987 GO:0010224 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0030097 GO:0030099 GO:0030154 GO:0030218 GO:0030684 GO:0030687 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034101 GO:0034470 GO:0034613 GO:0034641 GO:0034644 GO:0034645 GO:0034655 GO:0034660 GO:0042175 GO:0042254 GO:0042273 GO:0042592 GO:0042886 GO:0043009 GO:0043021 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0048872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:0104004 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 ko03010 ko04138 ko04141 map00510 map00513 map01100 map03010 map04138 map04141
Pfam Domains
Protein Families
Ribosomal_L29

Protein Analysis

137

Amino Acids

15.21

Weight (kDa)

5.75

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 211
AciI CCGC 1 cut(s) 114
AclWI GGATC 4 cut(s) 17, 75, 368, 381
AcuI CTGAAG 2 cut(s) 83, 92
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 2 cut(s) 160, 339
AjnI CCWGG 1 cut(s) 258
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 25, 49, 195
AluI AGCT 3 cut(s) 25, 49, 195
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 4 cut(s) 17, 75, 368, 381
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 16, 262
AsuHPI GGTGA 4 cut(s) 16, 91, 100, 161
AvaII GGWCC 1 cut(s) 16
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 2 cut(s) 27, 121
BarI GAAGNNNNNNTAC 2 cut(s) 315, 347
BauI CACGAG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 260
BfaI CTAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 16, 262
BmiI GGNNCC 2 cut(s) 118, 375
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 296, 303
BpiI GAAGAC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 102, 259
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 102, 259
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 182
BshFI GGCC 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 271
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 27, 121
Bsp143I GATC 3 cut(s) 9, 67, 373
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 118, 375
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 4 cut(s) 17, 75, 368, 381
BssECI CCNNGG 2 cut(s) 102, 259
BssMI GATC 3 cut(s) 9, 67, 373
BssNI GRCGYC 1 cut(s) 275
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 26, 201
BstEII GGTNACC 1 cut(s) 106
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 3 cut(s) 12, 70, 376
BstMBI GATC 3 cut(s) 9, 67, 373
BstMWI GCNNNNNNNGC 2 cut(s) 83, 360
BstNI CCWGG 1 cut(s) 260
BstPI GGTNACC 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 67, 373
BstYI RGATCY 2 cut(s) 67, 373
BsuRI GGCC 1 cut(s) 264
BveI ACCTGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 16, 262
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 332
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 1 cut(s) 394
CviJI RGCY 6 cut(s) 25, 49, 119, 155, 195, 264
CviKI_1 RGCY 6 cut(s) 25, 49, 119, 155, 195, 264
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 2 cut(s) 26, 201
DpnI GATC 3 cut(s) 11, 69, 375
DpnII GATC 3 cut(s) 9, 67, 373
DraI TTTAAA 1 cut(s) 301
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 2 cut(s) 27, 121
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 83, 92
Eco91I GGTNACC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 27, 121
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 397
FaiI YATR 7 cut(s) 167, 308, 330, 365, 383, 395, 409
FatI CATG 1 cut(s) 393
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 196
FriOI GRGCYC 2 cut(s) 27, 121
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 264
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 1 cut(s) 397
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 2 cut(s) 59, 175
HindII GTYRAC 2 cut(s) 59, 175
HinfI GANTC 1 cut(s) 96
HphI GGTGA 4 cut(s) 16, 91, 100, 161
Hpy166II GTNNAC 4 cut(s) 19, 59, 175, 212
Hpy188I TCNGA 4 cut(s) 29, 72, 95, 280
Hpy8I GTNNAC 4 cut(s) 19, 59, 175, 212
HpyAV CCTTC 3 cut(s) 58, 67, 379
HpyCH4V TGCA 1 cut(s) 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 360
HpyF3I CTNAG 2 cut(s) 26, 201
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 1 cut(s) 397
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 3 cut(s) 9, 67, 373
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 4 cut(s) 124, 245, 272, 276
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 2 cut(s) 296, 303
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 97, 106
MalI GATC 3 cut(s) 11, 69, 375
MboI GATC 3 cut(s) 9, 67, 373
MboII GAAGA 4 cut(s) 222, 266, 332, 335
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 2 cut(s) 67, 373
MhlI GDGCHC 2 cut(s) 27, 121
MluCI AATT 2 cut(s) 339, 378
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 5 cut(s) 98, 101, 145, 310, 337
MseI TTAA 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 83, 360
NdeII GATC 3 cut(s) 9, 67, 373
NlaIII CATG 1 cut(s) 397
NlaIV GGNNCC 2 cut(s) 118, 375
NmuCI GTSAC 2 cut(s) 97, 106
PaqCI CACCTGC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 106
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 118, 375
PspPI GGNCC 2 cut(s) 16, 262
PsuI RGATCY 2 cut(s) 67, 373
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 9, 67, 373
Sau96I GGNCC 2 cut(s) 16, 262
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 27, 121
SetI ASST 8 cut(s) 18, 27, 51, 108, 113, 148, 172, 197
SfaNI GCATC 2 cut(s) 296, 303
SinI GGWCC 1 cut(s) 16
Sse9I AATT 2 cut(s) 339, 378
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 102
TaqI TCGA 1 cut(s) 358
TasI AATT 2 cut(s) 339, 378
TatI WGTACW 1 cut(s) 331
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 2 cut(s) 97, 106
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 2 cut(s) 97, 106
TspDTI ATGAA 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 211
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.