Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002234

Physical Location & Seq

Genomic Coordinates Reverse (-)

25282429 .. 25283766

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G226300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGAGAATCAAGGTACACGAGCTGAGGCAGAAAACAAAGGCTGAGCTTTTGAACCAGCTCAAGGATCTCAAGGCAGAGCTTGCCCTTCTTCGCGTGGCCAAGGTCACTGGTGGAGCACCCAATAAGCTCTCCAAGATCAAGGTTGTGAGGCTATCGATCGCCCAAGTGTTGACTGTGATATCACAGAAGCAAAAGTCTGCCCTGAGAGAAGTGTACAAGAACAAGAAGTTCTTGCCTCTTGATCTGCGTCCCAAGAAGACCAGAGCTATCCGCCGAAGGCTCACCAAGCACCAGGCATCTTTGAAGACCGAGAGGGAGAAGAAGAAGGAAATGTATTATCCCTTGAGGAAGTATGCCATTAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29

Protein Analysis

124

Amino Acids

14.33

Weight (kDa)

10.92

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39390 AT3G09500 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT3G55170 AT5G02610 AT5G02610
fragaria_vesca	FvH4_3g34730 FvH4_7g20960
malus_domestica	MD01G1119600.v1.1 MD03G1102300.v1.1 MD07G1188600.v1.1 MD11G1116100.v1.1
prunus_persica	Prupe.2G139200_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.2G226300_v2.0.a1 Prupe.6G086600_v2.0.a1
pyrus_communis	pycom01g14620 pycom07g17870
rosa_chinensis	RchiOBHm_Chr1g0365321 RchiOBHm_Chr2g0098001 RchiOBHm_Chr5g0062471
rosa_laevigata	RLG00000027430 RLG00000035559
rosa_multiflora	Rmu_sc0004695.1_g000009 Rmu_sc0005277.1_g000021 Rmu_sc0010918.1_g000006
rosa_roxburghii	Rroxscaffold_1G00018140 Rroxscaffold_4G00279280 Rroxscaffold_4G00291310
rosa_rugosa	Rorug01G0321100 Rorug05G0349600
rosa_samantha	Rh1AG330000 Rh1BG291400 Rh1DG323100 Rh5BG423800 Rh5CG302300 Rh5CG447600 Rh5DG438300
rosa_wichuraiana	Rw1G029260 Rw5G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	99
AfaI	GTAC	2 cut(s)	18, 218
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	55, 307
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	6 cut(s)	25, 49, 61, 82, 130, 269
AluI	AGCT	6 cut(s)	25, 49, 61, 82, 130, 269
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	101
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	266, 314
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	365
BlpI	GCTNAGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	308
BpiI	GAAGAC	2 cut(s)	266, 314
Bpu10I	CCTNAGC	1 cut(s)	26
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	3 cut(s)	47, 56, 367
Bsa29I	ATCGAT	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	296
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	17, 36, 197
BseNI	ACTGG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	67, 138, 159, 244
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	3 cut(s)	18, 37, 198
BspDI	ATCGAT	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	96
BspPI	GGATC	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	4 cut(s)	67, 138, 159, 244
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	26, 45, 206
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	4 cut(s)	70, 141, 162, 247
BstMBI	GATC	4 cut(s)	67, 138, 159, 244
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 289, 365
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	96
BstV2I	GAAGAC	2 cut(s)	266, 314
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	101
BsuTUI	ATCGAT	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	84
ClaI	ATCGAT	1 cut(s)	158
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	17, 217
CviQI	GTAC	2 cut(s)	17, 217
DdeI	CTNAG	3 cut(s)	26, 45, 206
DpnI	GATC	4 cut(s)	69, 140, 161, 246
DpnII	GATC	4 cut(s)	67, 138, 159, 244
EaeI	YGGCCR	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	2 cut(s)	357, 370
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	101
HgaI	GACGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	3 cut(s)	19, 174, 217
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	3 cut(s)	19, 174, 217
HpyAV	CCTTC	3 cut(s)	98, 273, 322
HpyCH4III	ACNGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 289, 365
HpyF3I	CTNAG	3 cut(s)	26, 45, 206
Kzo9I	GATC	4 cut(s)	67, 138, 159, 244
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	6 cut(s)	71, 96, 218, 277, 281, 308
LweI	GCATC	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	69, 140, 161, 246
MboI	GATC	4 cut(s)	67, 138, 159, 244
MboII	GAAGA	5 cut(s)	83, 271, 319, 334, 337
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MnlI	CCTC	5 cut(s)	21, 144, 249, 309, 342
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	83, 289, 365
NdeII	GATC	4 cut(s)	67, 138, 159, 244
NmuCI	GTSAC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	9
Ple19I	CGATCG	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	67
PvuI	CGATCG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	18, 218
RsaNI	GTAC	2 cut(s)	17, 217
SaqAI	TTAA	1 cut(s)	363
Sau3AI	GATC	4 cut(s)	67, 138, 159, 244
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	9 cut(s)	18, 27, 51, 63, 84, 108, 132, 147, 271
SfaNI	GCATC	1 cut(s)	308
SmlI	CTYRAG	3 cut(s)	62, 71, 346
SmoI	CTYRAG	3 cut(s)	62, 71, 346
SsiI	CCGC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	158
TaqII	GACCGA	1 cut(s)	326
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspRI	CASTG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.