Rroxscaffold_4G00291310

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002234
Physical Location & Seq
Forward (+)
11768425 .. 11769641
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291310.1

Sequence Viewer

Length: 372 bp
ATGGCCAGAATCAAGGTACACGAGCTGAGGCAGAAGTCGAAGGCCGATCTTTTGGCCCAGCTCAAGGATCTCAAGGCGGAGCTGGCCCTCCTCCGCGTCGCCAAGGTCACCGGTGGAGCACCCAACAAGCTCTCAAAGATTAAGGTTGTGAGGCTTGGGATTGCTCAGGTCTTGACAGTGATCTCGCAGAAGCAGAAGGCTGCGTTGAGGGAAGTGTACAAGAACAAGAAGCTCTTGCCTCTTGATCTTCGTCCCAAGAAGACCAGGGCCATTCGCCGAAAGCTCACCAAGCACCAGGCATCTTTGAAGACTGAACGTGAGAAGAAGAGGGAGATGTACTACCCCTTGAGGAAGTTTGCCATCAAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L29

Protein Analysis

123

Amino Acids

14.16

Weight (kDa)

11.04

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L29 PF00831 8 - 64 1.6e-17 Ribosomal L29 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 96
AciI CCGC 2 cut(s) 77, 94
AclWI GGATC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 3 cut(s) 18, 218, 338
AfiI CCNNNNNNNGG 1 cut(s) 64
AgeI ACCGGT 1 cut(s) 110
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 2 cut(s) 263, 294
AluBI AGCT 6 cut(s) 25, 61, 82, 130, 232, 283
AluI AGCT 6 cut(s) 25, 61, 82, 130, 232, 283
Alw21I GWGCWC 1 cut(s) 121
AlwI GGATC 1 cut(s) 75
AoxI GGCC 5 cut(s) 3, 42, 54, 84, 267
ApeKI GCWGC 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 55, 85, 267
AsuHPI GGTGA 2 cut(s) 100, 277
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 20
BbsI GAAGAC 2 cut(s) 266, 314
Bbv12I GWGCWC 1 cut(s) 121
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 368
BciT130I CCWGG 2 cut(s) 265, 296
BglI GCCNNNNNGGC 1 cut(s) 365
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 265, 296
BmgT120I GGNCC 3 cut(s) 55, 85, 267
BmrFI CCNGG 2 cut(s) 265, 296
BmsI GCATC 1 cut(s) 308
BpiI GAAGAC 2 cut(s) 266, 314
Bpu10I CCTNAGC 2 cut(s) 26, 165
BpuEI CTTGAG 3 cut(s) 47, 56, 367
BsaJI CCNNGG 2 cut(s) 102, 264
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 110
BseBI CCWGG 2 cut(s) 265, 296
BseDI CCNNGG 2 cut(s) 102, 264
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 17, 179
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 5 cut(s) 5, 44, 56, 86, 269
BshTI ACCGGT 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 5 cut(s) 5, 44, 56, 86, 269
Bsp1286I GDGCHC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 4 cut(s) 46, 67, 180, 244
BspACI CCGC 2 cut(s) 77, 94
BspANI GGCC 5 cut(s) 5, 44, 56, 86, 269
BspCNI CTCAG 2 cut(s) 18, 178
BspFNI CGCG 1 cut(s) 96
BspPI GGATC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 102, 264
BssMI GATC 4 cut(s) 46, 67, 180, 244
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 265, 296
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 320
BstAUI TGTACA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 26, 165
BstEII GGTNACC 1 cut(s) 106
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 4 cut(s) 49, 70, 183, 247
BstMBI GATC 4 cut(s) 46, 67, 180, 244
BstMWI GCNNNNNNNGC 3 cut(s) 83, 289, 365
BstNI CCWGG 2 cut(s) 265, 296
BstPI GGTNACC 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 263, 294
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 2 cut(s) 266, 314
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 5 cut(s) 5, 44, 56, 86, 269
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 55, 85, 267
CseI GACGC 1 cut(s) 85
Csp6I GTAC 3 cut(s) 17, 217, 337
CspAI ACCGGT 1 cut(s) 110
CviQI GTAC 3 cut(s) 17, 217, 337
DdeI CTNAG 2 cut(s) 26, 165
DpnI GATC 4 cut(s) 48, 69, 182, 246
DpnII GATC 4 cut(s) 46, 67, 180, 244
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 106
EcoO65I GGTNACC 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 263, 294
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaiI YATR 1 cut(s) 370
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 61
HaeIII GGCC 5 cut(s) 5, 44, 56, 86, 269
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 85
HinfI GANTC 1 cut(s) 9
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 100, 277
Hpy166II GTNNAC 2 cut(s) 19, 217
Hpy188III TCNNGA 2 cut(s) 172, 242
Hpy8I GTNNAC 2 cut(s) 19, 217
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 34, 190
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 289, 365
HpyF3I CTNAG 2 cut(s) 26, 165
HpySE526I ACGT 1 cut(s) 316
Kzo9I GATC 4 cut(s) 46, 67, 180, 244
LmnI GCTCC 2 cut(s) 79, 116
LpnPI CCDG 9 cut(s) 19, 68, 71, 124, 152, 250, 277, 281, 308
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 308
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 106
MalI GATC 4 cut(s) 48, 69, 182, 246
MboI GATC 4 cut(s) 46, 67, 180, 244
MboII GAAGA 5 cut(s) 239, 271, 319, 334, 337
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 121
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 8 cut(s) 21, 98, 101, 144, 201, 249, 321, 342
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 265, 296
MvaI CCWGG 2 cut(s) 265, 296
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 3 cut(s) 83, 289, 365
NdeII GATC 4 cut(s) 46, 67, 180, 244
NmuCI GTSAC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 9
PinAI ACCGGT 1 cut(s) 110
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 263, 294
PspEI GGTNACC 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 2 cut(s) 263, 294
PspPI GGNCC 3 cut(s) 55, 85, 267
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 3 cut(s) 18, 218, 338
RsaNI GTAC 3 cut(s) 17, 217, 337
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 4 cut(s) 46, 67, 180, 244
Sau96I GGNCC 3 cut(s) 55, 85, 267
ScrFI CCNGG 2 cut(s) 265, 296
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 1 cut(s) 308
SgrAI CRCCGGYG 1 cut(s) 110
SmlI CTYRAG 3 cut(s) 62, 71, 346
SmoI CTYRAG 3 cut(s) 62, 71, 346
SsiI CCGC 2 cut(s) 77, 94
StyD4I CCNGG 2 cut(s) 263, 294
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 38
TatI WGTACW 2 cut(s) 216, 336
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 106
TspRI CASTG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.